View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_224 (Length: 240)

Name: NF0856_low_224
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_224
NF0856_low_224
[»] chr5 (3 HSPs)
chr5 (69-229)||(26405445-26405605)
chr5 (68-135)||(8297583-8297650)
chr5 (71-129)||(26045866-26045924)
[»] chr4 (2 HSPs)
chr4 (68-146)||(41117866-41117944)
chr4 (69-136)||(16832921-16832988)
[»] chr1 (3 HSPs)
chr1 (70-136)||(31290920-31290986)
chr1 (71-136)||(6583118-6583183)
chr1 (72-136)||(16147672-16147736)
[»] chr3 (4 HSPs)
chr3 (71-135)||(37999061-37999125)
chr3 (69-136)||(14879550-14879617)
chr3 (73-136)||(25647800-25647863)
chr3 (74-129)||(14194054-14194109)
[»] chr2 (5 HSPs)
chr2 (69-136)||(37770542-37770609)
chr2 (71-136)||(10173479-10173544)
chr2 (71-136)||(16952284-16952349)
chr2 (71-136)||(17022949-17023014)
chr2 (71-136)||(17060255-17060320)
[»] chr6 (1 HSPs)
chr6 (69-114)||(3880498-3880543)
[»] chr7 (2 HSPs)
chr7 (69-133)||(24324697-24324761)
chr7 (69-136)||(8745267-8745334)
[»] chr8 (2 HSPs)
chr8 (73-131)||(8862505-8862563)
chr8 (68-134)||(17656901-17656967)
[»] scaffold0063 (1 HSPs)
scaffold0063 (70-114)||(58263-58307)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 69 - 229
Target Start/End: Original strand, 26405445 - 26405605
Alignment:
Q  69 tgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctctggatctctgaaggagcagtttattatactttg 168  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  26405445 tgaacaccaaagtcgagccacctccgaaaagctcatatccgaaagaccaatcagcttccaccacctctcgatctccgaaggagcagtttattatactttg 26405544  T
Q  169 tgacaaataattctcaatctattttaggttcaattttagttagacatgtacatcaataaat 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26405545 tgacaaataattctcaatctattttaggttcaattttagttagacatgtacatcaataaat 26405605  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 8297650 - 8297583
Alignment:
Q  68 atgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctc 135  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||||||| | | |||||||||||||    
T  8297650 atgaacaccaaaaccgagccacatccgaaaagctcctatccgaaagaccattcaacttccaccacctc 8297583  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 26045866 - 26045924
Alignment:
Q  71 aacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccac 129  Q
    |||||||||  |||| ||||||||||||||||||||| |||||| |||| |||||||||    
T  26045866 aacaccaaagttgagtcacctccgaaaagctcatatctgaaagatcaatcagcttccac 26045924  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 41117866 - 41117944
Alignment:
Q  68 atgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctctggatctctga 146  Q
    |||||||||||| |||||||||||||| ||||||| ||| ||||||| || | |||||||||||||||| || ||||||    
T  41117866 atgaacaccaaacctgagccacctccgcaaagctcctattcgaaagatcattcagcttccaccacctctcgacctctga 41117944  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 16832921 - 16832988
Alignment:
Q  69 tgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 136  Q
    |||||||||||  |||||||| |||||||||||||||||| ||||| || | |||||| | |||||||    
T  16832921 tgaacaccaaagttgagccacatccgaaaagctcatatcccaaagatcattcagcttcaatcacctct 16832988  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 31290920 - 31290986
Alignment:
Q  70 gaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 136  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||| |||  | ||||||||||||||    
T  31290920 gaacaccaaagctgagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctct 31290986  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 6583118 - 6583183
Alignment:
Q  71 aacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 136  Q
    ||||||||| ||||||| | |||||||||||| |||| |||||| |||| ||||||||||||||||    
T  6583118 aacaccaaagctgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctct 6583183  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 16147736 - 16147672
Alignment:
Q  72 acaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 136  Q
    |||||||| ||||||||| ||||||||||||||||| |||||| || | | ||| ||||||||||    
T  16147736 acaccaaagctgagccacatccgaaaagctcatatctgaaagatcattcaactttcaccacctct 16147672  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 37999061 - 37999125
Alignment:
Q  71 aacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctc 135  Q
    |||||||||  ||| |||||||| |||||||| ||||| ||||| ||||||||||||||||||||    
T  37999061 aacaccaaagttgatccacctccaaaaagctcctatccaaaagatcaattagcttccaccacctc 37999125  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 14879617 - 14879550
Alignment:
Q  69 tgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 136  Q
    ||||||||||| | ||||||| |||||||||||| |||| |||||| || | ||||||||||||||||    
T  14879617 tgaacaccaaacccgagccacatccgaaaagctcctatctgaaagatcattaagcttccaccacctct 14879550  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 25647863 - 25647800
Alignment:
Q  73 caccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 136  Q
    ||||||||||||||||| ||||||||||||||| |||||||| || | | ||| ||||||||||    
T  25647863 caccaaaactgagccacgtccgaaaagctcataaccgaaagatcattcaactttcaccacctct 25647800  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 14194109 - 14194054
Alignment:
Q  74 accaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccac 129  Q
    |||||||||||||||| |||||||||||| || ||||||||| | | |||||||||    
T  14194109 accaaaactgagccacgtccgaaaagctcctaaccgaaagacaattcagcttccac 14194054  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 37770542 - 37770609
Alignment:
Q  69 tgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 136  Q
    ||||||||||| | |||||||||| |||||||||||||| |||||| || | |||||||| |||||||    
T  37770542 tgaacaccaaagccgagccacctcagaaaagctcatatctgaaagatcattcagcttccaacacctct 37770609  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 10173479 - 10173544
Alignment:
Q  71 aacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 136  Q
    ||||||||| ||||||||| |||||||||||||||| | ||||| || | | ||||||||||||||    
T  10173479 aacaccaaagctgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctct 10173544  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 16952284 - 16952349
Alignment:
Q  71 aacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 136  Q
    |||||||||  ||| |||| |||||||||||| ||||||||||| |  ||||||||||||||||||    
T  16952284 aacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctct 16952349  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 17022949 - 17023014
Alignment:
Q  71 aacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 136  Q
    |||||||||  ||| |||| |||||||||||| ||||||||||| |  ||||||||||||||||||    
T  17022949 aacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctct 17023014  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 17060255 - 17060320
Alignment:
Q  71 aacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 136  Q
    |||||||||  ||| |||| |||||||||||| ||||||||||| |  ||||||||||||||||||    
T  17060255 aacaccaaagttgatccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctct 17060320  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 3880498 - 3880543
Alignment:
Q  69 tgaacaccaaaactgagccacctccgaaaagctcatatccgaaaga 114  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  3880498 tgaacaccaaagctgagccacatccaaaaagctcatatccgaaaga 3880543  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 24324697 - 24324761
Alignment:
Q  69 tgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacc 133  Q
    ||||||||||| |||||||||  ||||||||||| || |||||||| || | |||||||||||||    
T  24324697 tgaacaccaaagctgagccacagccgaaaagctcctaaccgaaagatcattcagcttccaccacc 24324761  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 8745334 - 8745267
Alignment:
Q  69 tgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 136  Q
    ||||||||||| ||||||||| |||||||||||| |||| |||||| ||   ||||||||| ||||||    
T  8745334 tgaacaccaaagctgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctct 8745267  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 8862505 - 8862563
Alignment:
Q  73 caccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccacca 131  Q
    ||||||| ||||||||| || |||||| |||||||||||||| || | |||||||||||    
T  8862505 caccaaagctgagccacatctgaaaagttcatatccgaaagatcattcagcttccacca 8862563  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 17656901 - 17656967
Alignment:
Q  68 atgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacct 134  Q
    ||||||||||||  ||||||||||| ||||||||| |||  |||||| || | ||||||||||||||    
T  17656901 atgaacaccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacct 17656967  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 58307 - 58263
Alignment:
Q  70 gaacaccaaaactgagccacctccgaaaagctcatatccgaaaga 114  Q
    |||||||||| ||||||||| | |||||||||| |||||||||||    
T  58307 gaacaccaaagctgagccacattcgaaaagctcttatccgaaaga 58263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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