View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_225 (Length: 239)
Name: NF0856_low_225
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_225 |
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Alignment Details
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 11843154 - 11843201
Alignment:
| Q |
102 |
ccatttaacaactctatttttcagtatggcctatatcgctcacaaatt |
149 |
Q |
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| T |
11843154 |
ccatttgacaactctacttttcagtatggcctatatcactcacaaatt |
11843201 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 11843105 - 11843145
Alignment:
| Q |
10 |
atttagcaaacatacttttcagcaaacacgttggcccactc |
50 |
Q |
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| T |
11843105 |
atttagcaaacatacttttcagcaaacatgttggctcactc |
11843145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 11788960 - 11789049
Alignment:
| Q |
144 |
caaattcttgctttctctattttccactttcgcctctatttatgttgccatagggctattcttccttctcttccccctccttcatctcac |
233 |
Q |
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| T |
11788960 |
caaactcttgttctctatattttccactttcacatctatttatgtcttcataaggtttttcttcattctcttcccgctccttcatttcac |
11789049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 11823234 - 11823291
Alignment:
| Q |
171 |
tttcgcctctatttatgttgccatagggctattcttccttctcttccccctccttcat |
228 |
Q |
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| T |
11823234 |
tttcccctctatttaggtcgccataaggtttttcttccttctcttcccgctccttcat |
11823291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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