View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_low_229 (Length: 236)
Name: NF0856_low_229
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_229 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 35354506 - 35354726
Alignment:
| Q |
1 |
tgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||| |
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| T |
35354506 |
tgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatggcttctaacttaccatggtggagaatagatggtg |
35354605 |
T |
|
| Q |
101 |
tgattcttacagtaatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |
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|
| T |
35354606 |
tgattcttacagcaatattgcatgctggaccagtggagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcactc |
35354705 |
T |
|
| Q |
201 |
tcatcaccattcttcaattgt |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
35354706 |
tcatcaccattcttcaattgt |
35354726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35369651 - 35369872
Alignment:
| Q |
1 |
tgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtg |
100 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||| || ||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||| |
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|
| T |
35369651 |
tgcagggatgaccaaattttgttcactgcactgttatactacataggatacatgatatttcctatggcttctaacttaccatggtggagaatagatggtg |
35369750 |
T |
|
| Q |
101 |
tgattcttacagtaatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
35369751 |
tgattcttacagcaatattgcatgctggaccagtcgagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattc |
35369850 |
T |
|
| Q |
201 |
tcatcaccattcttcaattgtc |
222 |
Q |
| |
|
||| || ||||||||||||||| |
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|
| T |
35369851 |
tcaccatcattcttcaattgtc |
35369872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35379010 - 35379231
Alignment:
| Q |
1 |
tgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtg |
100 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||||| ||||| |||| | ||||||||||| || ||||| |||||||||||||||| |||||||| |
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|
| T |
35379010 |
tgcagggatgatcaaatgttgttcactgtactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaatagatggtg |
35379109 |
T |
|
| Q |
101 |
tgattcttacagtaatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattc |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
35379110 |
tgattcttacagcaatattgcatgctggaccagtcgagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattc |
35379209 |
T |
|
| Q |
201 |
tcatcaccattcttcaattgtc |
222 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
35379210 |
tcaccatcattcttcaattgtc |
35379231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 19684072 - 19684293
Alignment:
| Q |
1 |
tgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | | ||||||| |||| |||||||||||| || | || ||||||||||||||||||||||||| |
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|
| T |
19684072 |
tgcagggatgatcaaatattgttcactgcattaatgttttatatactttacacgatatttcctatggctgccaacttaccatggtggagaacagatggtg |
19684171 |
T |
|
| Q |
101 |
tgattcttacagtaatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattc |
200 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |
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|
| T |
19684172 |
tgattcttacagctatcttgcatgctggaccagtggagttcttatactattggctacatagagcacttcatcatcattatctatattctcgttaccattc |
19684271 |
T |
|
| Q |
201 |
tcatcaccattcttcaattgtc |
222 |
Q |
| |
|
||| || ||||||||||||||| |
|
|
| T |
19684272 |
tcaccatcattcttcaattgtc |
19684293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19630725 - 19630504
Alignment:
| Q |
1 |
tgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatagcctctaatttaccatggtggagaacagatggtg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | |||||| ||||| ||||||||||| || |||| ||||||||||||||||||||||||| |
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|
| T |
19630725 |
tgcagggatgatcaaatattgttgactgcactaaccttctatatactatacacaatatttcctatggctgctaacttaccatggtggagaacagatggtg |
19630626 |
T |
|
| Q |
101 |
tgattcttacagtaatattgcatgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattc |
200 |
Q |
| |
|
|| ||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
19630625 |
tggttcttacagctctcttgcatgctggaccagtggagttcttatactattggctacatagagcacttcatcatcattatctatactctcgttaccattc |
19630526 |
T |
|
| Q |
201 |
tcatcaccattcttcaattgtc |
222 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
19630525 |
tcatcatcattcttcaattgtc |
19630504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 2258558 - 2258463
Alignment:
| Q |
126 |
tggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattgt |
221 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||| |||||||||||||| |||| || || ||| | |||||||||||||| |||||||| ||||| |
|
|
| T |
2258558 |
tggaccagtggagtttctttactattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattgt |
2258463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 2280553 - 2280453
Alignment:
| Q |
121 |
catgctggaccagtggagtttttatactattggctacatagagcacttcatcaccattatctatactctcgttatcattctcatcaccattcttcaattg |
220 |
Q |
| |
|
||||||||| |||| || ||| | || |||||| |||| |||||||||||||| |||| || || ||| | |||||||||||||| |||||||| |||| |
|
|
| T |
2280553 |
catgctggagcagttgaatttctttattattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattg |
2280454 |
T |
|
| Q |
221 |
t |
221 |
Q |
| |
|
| |
|
|
| T |
2280453 |
t |
2280453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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