View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_low_247 (Length: 220)
Name: NF0856_low_247
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_247 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 30741741 - 30741548
Alignment:
| Q |
1 |
ttactagtagtctaagatatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30741741 |
ttactagtagtctaagatatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcc |
30741642 |
T |
|
| Q |
101 |
tgaaaatcctatgagatacaggtaaatgaaaactacaaaacttgcactcttatgagaaaaatagatttaactttaaaaagatattcataatgta |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30741641 |
tgaaaatcctatgagatacaggtaaatgaaaactacaaaacttgcactcttatgagaaaaatagatttaactttaaaaagatattcataatgta |
30741548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 30784131 - 30784006
Alignment:
| Q |
1 |
ttactagtagtctaagatatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcc |
100 |
Q |
| |
|
||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
30784131 |
ttactagcagtcttagatatgaaactgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaccagtggcaacacttatggcc |
30784032 |
T |
|
| Q |
101 |
tgaaaatcctatgagatacaggtaaa |
126 |
Q |
| |
|
||||||||| || | ||||||||||| |
|
|
| T |
30784031 |
tgaaaatccaattacatacaggtaaa |
30784006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 30761580 - 30761469
Alignment:
| Q |
17 |
atatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcctgaaaatcctatgaga |
116 |
Q |
| |
|
||||||| ||| ||||||||| | |||||||| | ||||||||||||| || ||||||||||||||||| |||||| ||||||||| |||| | | | |
|
|
| T |
30761580 |
atatgaatttgataaggttcatctttggagggacactcttagacacccagcttatcctttggaacagtggcaacacttgtggcctgaatatccaactaca |
30761481 |
T |
|
| Q |
117 |
tacaggtaaatg |
128 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30761480 |
tacaggtaaatg |
30761469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 30809058 - 30808929
Alignment:
| Q |
1 |
ttactagtagtctaagatatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcc |
100 |
Q |
| |
|
||||||||||| | | ||||| ||||||||||||||| ||||||| || | |||||| || | || | |||||||||| |||||| |||| ||||||| |
|
|
| T |
30809058 |
ttactagtagtatcaactatgacagtgaaaaggttcatctatggagagacaatcttaggcatcaatgttatcctttggagcagtggcaacacatatggcc |
30808959 |
T |
|
| Q |
101 |
tgaaaatcctatgagatacaggtaaatgaa |
130 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
30808958 |
tgaaaatccacctagatacaggtaaatgaa |
30808929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 30801563 - 30801457
Alignment:
| Q |
26 |
tgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcctgaaaatcctatgagatacaggtaa |
125 |
Q |
| |
|
||||||||||||| ||||| | || |||||| | ||||||| | |||||||||| || ||| ||||||||||||||||||||| | | |||||||||| |
|
|
| T |
30801563 |
tgaaaaggttcatctatggcgagacagtcttcgccacccatgttatcctttggagcaatggcaacacttatggcctgaaaatccaactacatacaggtaa |
30801464 |
T |
|
| Q |
126 |
atgaaaa |
132 |
Q |
| |
|
|| |||| |
|
|
| T |
30801463 |
ataaaaa |
30801457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 30749371 - 30749260
Alignment:
| Q |
17 |
atatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcctgaaaatcctatgaga |
116 |
Q |
| |
|
||||||| |||| ||||||||| |||||||||| |||| |||| ||| || |||||||||| ||||| |||||| ||||||||| |||| | | | |
|
|
| T |
30749371 |
atatgaatgtgataaggttcatctatggagggactctcttcgacatccagcttatcctttggaggagtggcaacacttgtggcctgaatatccaaataca |
30749272 |
T |
|
| Q |
117 |
tacaggtaaatg |
128 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30749271 |
tacaggtaaatg |
30749260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 30770822 - 30770711
Alignment:
| Q |
17 |
atatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcctgaaaatcctatgaga |
116 |
Q |
| |
|
||||||| |||| ||||||||| |||||||||| |||| |||| ||| || |||||||||| ||||| |||||| ||||||||| |||| | | | |
|
|
| T |
30770822 |
atatgaatgtgataaggttcatctatggagggactctcttcgacatccagcttatcctttggaggagtggcaacacttgtggcctgaatatccaaataca |
30770723 |
T |
|
| Q |
117 |
tacaggtaaatg |
128 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30770722 |
tacaggtaaatg |
30770711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1813 times since January 2019
Visitors: 6150