View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_low_248 (Length: 219)
Name: NF0856_low_248
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_248 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 42085992 - 42086113
Alignment:
| Q |
1 |
taatctcccacccaacacagaaaacactgatactgtcccttacaatcttgtcatcaaactcatccaagcttctctttccttaaaaccttccttcaaaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42085992 |
taatctcccacccaacacagaaaacactgatactgtcccttacaatcttgtcatcaaactcatccaagcttctctttccttaaaaccttccttcaaatac |
42086091 |
T |
|
| Q |
101 |
atcatccaaaacatcttaaccc |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42086092 |
atcatccaaaacatcttaaccc |
42086113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 42081773 - 42081889
Alignment:
| Q |
5 |
ctcccacccaacacagaaaacactgatactgtcccttacaatcttgtcatcaaactcatccaagcttctctttccttaaaaccttccttcaaaaacatca |
104 |
Q |
| |
|
||||||| |||||||||||||| ||| ||||| |||| ||||||||||||||||| || ||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42081773 |
ctcccactcaacacagaaaacattgagactgttccttgcaatcttgtcatcaaacgtatacaaacttctctttccttaaaaccatccttcaaaaacatca |
42081872 |
T |
|
| Q |
105 |
tccaaaacatcttaacc |
121 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
42081873 |
tccaaaacatcataacc |
42081889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1909 times since January 2019
Visitors: 6151