View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_28 (Length: 523)
Name: NF0856_low_28
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 30 - 512
Target Start/End: Original strand, 38221518 - 38222002
Alignment:
| Q |
30 |
acaagttgttttttgagctaggtccaacccaagttttaataatatgttttctaaaaagaagttcccttttacatacaaggaatattatgggaataacgtt |
129 |
Q |
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| T |
38221518 |
acaagttgttttttgagctaggtccaacccaagttttaataatatgttttctaaaaagaagttcccttttacatacaaggaatattatgggaataacgtt |
38221617 |
T |
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| Q |
130 |
acttcaaatgttaactgaaaacagtgaaagatgacagtagaagacattatctcttttagttatgtgatgaaatatccaaaatgaaacacacagcctatat |
229 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38221618 |
acttcaaatcttaactgaaaacagtgaaagatgacagtagaagacattatctcttttagttatgtgatgaaatatccaaaatgaaacacacagcctatat |
38221717 |
T |
|
| Q |
230 |
ttcaaaactctaattttgccta--actaaaagtctgtactttttatggattttaaactgtggttattgtctaaattgttttgaccaactgaaaaaataaa |
327 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
38221718 |
ttcaaaactctaattttgcctataactaaaagtctgtactttttatggattttaaactgcggttattgtctaaattgttttgacctactgaaaaaataaa |
38221817 |
T |
|
| Q |
328 |
ggcttgacggtgcttttaattatcccaatcccacaaatgcaattatagtctctctcatttcaattgctacaatgttatcttggtaatttttgatttgaca |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38221818 |
ggcttgacggtgcttttaattatcccaatcccacaaatgcaattatagtctctctcatttcaattgctacaatgttatcttggtaatttttgatttgaca |
38221917 |
T |
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| Q |
428 |
atttaacatcaacagggcactatcttttgctaacatgaaagtgcctttttattgactttgattgcacagaaatgatttacttcat |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38221918 |
atttaacatcaacagggcactatcttttgctaacatgaaagtgcctttttattgactttgattgcacagaaatgatttacttcat |
38222002 |
T |
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