View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_280 (Length: 202)
Name: NF0856_low_280
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_280 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 9e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 32750284 - 32750128
Alignment:
| Q |
32 |
tttggaattaagacactagaaggcaaatgatttatgagataagatgcagctaaaactgccttcctaagctttttcgagaaccttattttggaataatata |
131 |
Q |
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| T |
32750284 |
tttggaattaagacactagaaggcaaatgatttatgagataagatgcagctaaaactgccttcctaagctttttcgagaaccttattttgaaataatata |
32750185 |
T |
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| Q |
132 |
gtttgagtttgatcaaacaagtgctaatgttttctcttagcaacctcatattgttgg |
188 |
Q |
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| T |
32750184 |
gtttgagtttgatcaaacaagtgcccattttttctcttagcaacctcattttgttgg |
32750128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 50058921 - 50058774
Alignment:
| Q |
43 |
gacactagaaggcaaatgatttatgagataagatgcagctaaaactgccttcct--aagctttttcgagaaccttattttggaataatatagtttgagtt |
140 |
Q |
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| T |
50058921 |
gacactagaaggtaaacggtttatgaggtaagatgctgttaaaactgcctccccccaaaatttcttaggaaccttattttggaataacatagctcgagtt |
50058822 |
T |
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| Q |
141 |
tgatcaaacaagtgctaatgttttctcttagcaacctcatattgttgg |
188 |
Q |
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| T |
50058821 |
tgatctaacaaatgcccattttttctctcagcaaccccattttgttgg |
50058774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 186
Target Start/End: Original strand, 28094515 - 28094660
Alignment:
| Q |
43 |
gacactagaaggcaaatgatttatgagataagatgcagctaaaactgcct--tcctaagctttttcgagaaccttattttggaataatatagtttgagtt |
140 |
Q |
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| T |
28094515 |
gacactagaaggtaaacgatttatgagataagatgcaattaaaaccgcctccccccaaaatctcttaggaaccttattttgaaataacatagcttgagtt |
28094614 |
T |
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| Q |
141 |
tgatcaaacaagtgctaatgttttctcttagcaacctcatattgtt |
186 |
Q |
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| T |
28094615 |
tgatctaacaaatggccattttttctctcagcaaccccattttgtt |
28094660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 31972658 - 31972615
Alignment:
| Q |
43 |
gacactagaaggcaaatgatttatgagataagatgcagctaaaa |
86 |
Q |
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| T |
31972658 |
gacattagaaggtaaacgatttatgagataagatgcagctaaaa |
31972615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 29442362 - 29442408
Alignment:
| Q |
41 |
aagacactagaaggcaaatgatttatgagataagatgcagctaaaac |
87 |
Q |
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| T |
29442362 |
aagacaatagaaggtaaacgatttatgagataagatgcagttaaaac |
29442408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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