View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_283 (Length: 201)
Name: NF0856_low_283
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_283 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 47292096 - 47292290
Alignment:
| Q |
7 |
cactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagt |
106 |
Q |
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| T |
47292096 |
cactcggtgtaggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagt |
47292195 |
T |
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| Q |
107 |
ttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccaccatacaccccttcac |
201 |
Q |
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| T |
47292196 |
ttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccaccatacaccccttcac |
47292290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 47298697 - 47298897
Alignment:
| Q |
1 |
taggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacat |
100 |
Q |
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| T |
47298697 |
taggagcactcaatgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacat |
47298796 |
T |
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| Q |
101 |
caaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccaccatacaccccttca |
200 |
Q |
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| T |
47298797 |
caaagtttcttctccttttatattcttatatgggacgatataggttgctccaggaaaaggtccagccccaccttttgcaactccaccatacaccccttca |
47298896 |
T |
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| Q |
201 |
c |
201 |
Q |
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| T |
47298897 |
c |
47298897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 47268136 - 47267966
Alignment:
| Q |
23 |
attttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccatttata |
122 |
Q |
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|||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||| | |||| || ||| ||||||||| | || | |
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| T |
47268136 |
attttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctaca |
47268037 |
T |
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| Q |
123 |
ttcttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccaccatacac |
193 |
Q |
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| T |
47268036 |
ttcttatgtgggatgatataggctgctccaggaaaaggcccagccccactttttgcagctccaccatacac |
47267966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 47243254 - 47243109
Alignment:
| Q |
1 |
taggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacat |
100 |
Q |
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| T |
47243254 |
taggaccactcattgtaggataattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggtaatat |
47243155 |
T |
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| Q |
101 |
caaagtttcttctccatttatattcttatatgggacgatataggtt |
146 |
Q |
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| T |
47243154 |
taacccttcttctccttttgcattcttatgcgggacaatataggtt |
47243109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 47284123 - 47283930
Alignment:
| Q |
1 |
taggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacat |
100 |
Q |
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|||||||| ||| |||||| |||||||| ||||||| ||||| ||| ||||||| ||||||||||||||| ||||||||| || ||||| |||| || |
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| T |
47284123 |
taggaccaatcgttgtaggttgattttgattaccaaacatcttatctaactcttcagcaaacctcttcataacttcagaggttaagaaaattagtaatat |
47284024 |
T |
|
| Q |
101 |
caaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccaccatacacc |
194 |
Q |
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| T |
47284023 |
taaaccttcttctccttctgcattcttatgtgggattatatacgttgctccaggtaaaggtccagccccaccttttaccactccaccatacacc |
47283930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 47257381 - 47257285
Alignment:
| Q |
1 |
taggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaa |
97 |
Q |
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||||||||||| |||||||| |||||||||||||||||| ||||| ||||| || ||||||||||||||||||||| ||||| ||||||||||| |
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| T |
47257381 |
taggaccactcattgtaggataattttggttaccaagcatatcatctaactccttaacaaacctcttcatatcttcaggaggcaagcaaattggtaa |
47257285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 47279517 - 47279391
Alignment:
| Q |
14 |
tgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttct |
113 |
Q |
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|||||| |||||||||||||||| ||||| ||| ||||||| ||||||||||||||| ||||||||| || ||||| |||| |||||| ||||||| |
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| T |
47279517 |
tgtaggttgattttggttaccaaacatcttatctaactcttcagcaaacctcttcataacttcagaggttaagaaaattagtaatatcaaaccttcttct |
47279418 |
T |
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| Q |
114 |
ccatttatattcttatatgggacgata |
140 |
Q |
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|| | | |||||||| ||||| |||| |
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| T |
47279417 |
ccttctgcattcttatgtgggatgata |
47279391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 32731921 - 32731730
Alignment:
| Q |
1 |
taggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacat |
100 |
Q |
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||||||||||| ||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |||||| |||||||| || || |
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| T |
32731921 |
taggaccactcattgtaggacaattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggaaatat |
32731822 |
T |
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| Q |
101 |
caaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccaccataca |
192 |
Q |
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|| ||||||||| ||| |||||||| ||||| ||||||||| |||| || | | |||| ||||||||| | ||||||||||||| |
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| T |
32731821 |
taacccttcttctccttttgcattcttatgcgggacaatataggttcctccaagataagatccaattccaccttttactactccaccataca |
32731730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 20519924 - 20519740
Alignment:
| Q |
4 |
gaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaa |
103 |
Q |
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|||| |||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||| |||||||||| || || |
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| T |
20519924 |
gacctctcgttgtaggatgat---ggttaccaagcatctcatctaactctttagcaaacctcttcatatcttcataaggcaaagaaattggtaatattaa |
20519828 |
T |
|
| Q |
104 |
agtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccaccatac |
191 |
Q |
| |
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| || |||| ||| |||||||| |||||| || ||||| |||| |||| ||||||||| |||||||||||||||||||| |
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| T |
20519827 |
acctttttcttgttttgaattcttatgtgggacaatgatggttgctccacgaaaacccccagccccagcttttgcaactccaccatac |
20519740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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