View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_3 (Length: 902)
Name: NF0856_low_3
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 721; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 128 - 895
Target Start/End: Original strand, 40179744 - 40180514
Alignment:
| Q |
128 |
cacccttccatcttctttaaagattcgttctttttcaattccatcgcgaaaaatgaagacccatttgaattttatgcgtgattataacgattttggaatt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40179744 |
cacccttccatcttctttaaagattcgttctttttcaattccatcgcgaaaaatgaagacccatttgaattttatgcgtgattataacgattttggaatt |
40179843 |
T |
|
| Q |
228 |
gggttgttgttaattttgtaggtaactaaagttgcaaagacaaagaaagaaccttcaccatgcaattcttcttcaagctcagtgatttctgttaacaaaa |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40179844 |
gggttgttgttaattttgtaggtaactaaagttgcaaagacaaagaaagaaccttcaccatgcaattcttcttcaagctcagtgatttctgttaacaaaa |
40179943 |
T |
|
| Q |
328 |
aacctactttgtcgaatgttaaatccgctactgttgtttttcctaaagccattactgctac---tagtactacttcttcattttctggaaagaatgaagt |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
40179944 |
aacctactttgtcgaatgttaaatccgctactgttgtttttcctaaagccattactactactactagtactacttcttcattttctggaaagaatgaagt |
40180043 |
T |
|
| Q |
425 |
tgttcctcctccttcattggttgctcctactaccttcaatgttccggtttcgagtagtatggatttatcgtctcctggtaaatccgatggaatgtcggtt |
524 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40180044 |
tgttcctcctccttcatcggttgctcctactaccttcaatgttccggtttcgagtagtatggatttatcgtctcctggtaaatccgatggaatgtcggtt |
40180143 |
T |
|
| Q |
525 |
tctatggacgagacaatgtcgtcgtgtgattctttcaagagtcctgatattgaatatgtcgataacagtgatgttccagctgttgattctattgagagga |
624 |
Q |
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| T |
40180144 |
tctatggacgagacaatgtcgtcgtgtgattctttcaagagtcctgatattgaatatgtcgataacagtgatgttccagctgtagattctattgagagga |
40180243 |
T |
|
| Q |
625 |
agactttttgtagtctcaacatttctgattctaattacccatcaggttacattttgatgctgttttgatattcatagtcccataaattatgattatttgg |
724 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||||||||||||||||| |
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| T |
40180244 |
agactttttgtagtctcaacatttctgattctaattacccatcaggttacattttgatgctgtgtagatattcatagtctcgtaaattatgattatttgg |
40180343 |
T |
|
| Q |
725 |
ttacccttttgattttactggtggattttgagatgatactaatgattgatttgttttcaggtaacatttgcagtagagacattcttgttgagttggaaaa |
824 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40180344 |
ttacccttttgattttactggtgcattttgagatgatactaatgattgatttgttttcaggtaacatttgcagtagagacattcttgttgagttggaaaa |
40180443 |
T |
|
| Q |
825 |
gggagagaaaattgttaatattgataatgattacatggatcctcagctctgtgctacctttgcctatgata |
895 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40180444 |
gggagagaaaattgttaatattgataatgattacatggatcctcagctctgtgctacctttgcctgtgata |
40180514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 53193980 - 53193919
Alignment:
| Q |
131 |
ccttccatcttctttaaagattcgttctttttcaattccatcgcgaaaaatgaagacccatt |
192 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |||| | ||||| ||||||||||| |
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| T |
53193980 |
cctttcatcttgtttaaagattcgttctttttcaatttcatcacaaaaaaagaagacccatt |
53193919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 37533061 - 37532933
Alignment:
| Q |
186 |
acccatttgaattttatgcgtgattataacgattttggaattgggttgttgttaattttgtaggtaactaaagttgcaaagacaaagaaagaaccttcac |
285 |
Q |
| |
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|||||||||||||||||||| |||||||| ||| ||||| | | | ||||||||| | |||||||||||||||||||||||| ||||| ||| |
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| T |
37533061 |
acccatttgaattttatgcgagattataatgat---ggaatctattgggttttaattttgcaactaactaaagttgcaaagacaaagatagaactttcga |
37532965 |
T |
|
| Q |
286 |
catgcaattcttcttcaagctcagtgatttct |
317 |
Q |
| |
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||||||||||||||||||||| |||||||||| |
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| T |
37532964 |
catgcaattcttcttcaagcttagtgatttct |
37532933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 41762281 - 41762153
Alignment:
| Q |
186 |
acccatttgaattttatgcgtgattataacgattttggaattgggttgttgttaattttgtaggtaactaaagttgcaaagacaaagaaagaaccttcac |
285 |
Q |
| |
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|||||||||||||||||||| |||||||| ||| ||||| | | | ||||||||| | |||||||||||||||||||||||| | ||||||| |
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| T |
41762281 |
acccatttgaattttatgcgagattataatgat---ggaatctattgggttttaattttgcaactaactaaagttgcaaagacaaagatataaccttcga |
41762185 |
T |
|
| Q |
286 |
catgcaattcttcttcaagctcagtgatttct |
317 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
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| T |
41762184 |
catgcaattcttcttcaagcttagtgatttct |
41762153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 186 - 317
Target Start/End: Original strand, 43754442 - 43754570
Alignment:
| Q |
186 |
acccatttgaattttatgcgtgattataacgattttggaattgggttgttgttaattttgtaggtaactaaagttgcaaagacaaagaaagaaccttcac |
285 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||||| | | | ||||||||| | |||||||||||||||||||||||| ||||| ||| |
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| T |
43754442 |
acccatttgaattttatgcgagattataatgat---ggaatctattgggttttaattttgcaactaactaaagttgcaaagacaaagatagaacattcga |
43754538 |
T |
|
| Q |
286 |
catgcaattcttcttcaagctcagtgatttct |
317 |
Q |
| |
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||||||||||||||||||||| |||||||||| |
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| T |
43754539 |
catgcaattcttcttcaagcttagtgatttct |
43754570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 48880504 - 48880376
Alignment:
| Q |
186 |
acccatttgaattttatgcgtgattataacgattttggaattgggttgttgttaattttgtaggtaactaaagttgcaaagacaaagaaagaaccttcac |
285 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||||| | | | ||||||||| | |||||||||||||||||||||||| ||||| ||| |
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|
| T |
48880504 |
acccatttgaattttatgcgagattataatgat---ggaatctattgggttttaattttgcaactaactaaagttgcaaagacaaagatagaacattcga |
48880408 |
T |
|
| Q |
286 |
catgcaattcttcttcaagctcagtgatttct |
317 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
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|
| T |
48880407 |
catgcaattcttcttcaagcttagtgatttct |
48880376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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