View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_31 (Length: 504)

Name: NF0856_low_31
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_31
NF0856_low_31
[»] chr5 (30 HSPs)
chr5 (30-494)||(34112798-34113263)
chr5 (35-109)||(12425499-12425573)
chr5 (35-106)||(9202819-9202890)
chr5 (37-107)||(11700092-11700162)
chr5 (35-109)||(39105392-39105466)
chr5 (38-89)||(706394-706445)
chr5 (35-97)||(4014504-4014566)
chr5 (35-109)||(42569048-42569122)
chr5 (35-79)||(42573877-42573921)
chr5 (35-106)||(7674576-7674647)
chr5 (37-88)||(40590457-40590508)
chr5 (35-97)||(5963362-5963424)
chr5 (40-97)||(37112338-37112395)
chr5 (35-107)||(465882-465954)
chr5 (37-89)||(1465107-1465159)
chr5 (35-79)||(5559658-5559702)
chr5 (38-86)||(11054117-11054165)
chr5 (38-94)||(42582843-42582899)
chr5 (100-142)||(706407-706450)
chr5 (46-108)||(14714909-14714970)
chr5 (35-97)||(19460466-19460528)
chr5 (35-105)||(40848685-40848755)
chr5 (40-89)||(32022004-32022053)
chr5 (44-109)||(32172590-32172655)
chr5 (35-68)||(39248028-39248061)
chr5 (46-106)||(9927524-9927584)
chr5 (112-140)||(12425528-12425556)
chr5 (38-109)||(16945051-16945120)
chr5 (35-87)||(28776903-28776955)
chr5 (264-347)||(42100371-42100455)
[»] chr1 (33 HSPs)
chr1 (35-110)||(23544707-23544782)
chr1 (32-107)||(15784260-15784336)
chr1 (44-107)||(7028229-7028292)
chr1 (36-109)||(29793711-29793784)
chr1 (45-101)||(50319230-50319286)
chr1 (38-109)||(1432446-1432517)
chr1 (35-109)||(9572176-9572250)
chr1 (44-101)||(48748659-48748715)
chr1 (45-110)||(49888705-49888770)
chr1 (46-109)||(4200168-4200231)
chr1 (35-66)||(5894274-5894305)
chr1 (50-109)||(6074417-6074476)
chr1 (109-140)||(15477532-15477563)
chr1 (38-109)||(44928224-44928295)
chr1 (54-104)||(10280596-10280646)
chr1 (35-109)||(37841926-37842000)
chr1 (47-89)||(37842443-37842485)
chr1 (44-101)||(1255507-1255564)
chr1 (44-89)||(3887720-3887765)
chr1 (35-109)||(9656574-9656652)
chr1 (35-76)||(15942261-15942302)
chr1 (44-109)||(34619446-34619511)
chr1 (35-68)||(38116294-38116327)
chr1 (44-109)||(38160071-38160135)
chr1 (36-109)||(41163072-41163145)
chr1 (109-142)||(44251372-44251405)
chr1 (48-109)||(45990126-45990187)
chr1 (38-107)||(46499924-46499993)
chr1 (45-109)||(172646-172709)
chr1 (44-108)||(4549803-4549867)
chr1 (44-108)||(15687142-15687206)
chr1 (46-109)||(38758514-38758578)
chr1 (51-103)||(38867907-38867959)
[»] chr6 (19 HSPs)
chr6 (35-109)||(9093624-9093698)
chr6 (44-109)||(29274297-29274362)
chr6 (37-98)||(9559620-9559681)
chr6 (35-110)||(264299-264374)
chr6 (35-106)||(24476530-24476601)
chr6 (45-101)||(103391-103447)
chr6 (39-86)||(2514634-2514681)
chr6 (32-103)||(4578137-4578208)
chr6 (46-105)||(10749300-10749358)
chr6 (51-109)||(281916-281974)
chr6 (44-110)||(7351675-7351741)
chr6 (109-142)||(10749311-10749344)
chr6 (46-107)||(20671935-20671996)
chr6 (44-109)||(21959665-21959730)
chr6 (49-105)||(323753-323809)
chr6 (45-89)||(430464-430508)
chr6 (53-109)||(1402942-1402998)
chr6 (100-132)||(4081513-4081545)
chr6 (45-109)||(22742304-22742368)
[»] chr8 (20 HSPs)
chr8 (36-109)||(14280469-14280542)
chr8 (35-107)||(37444485-37444557)
chr8 (35-109)||(16210954-16211028)
chr8 (46-109)||(4558737-4558800)
chr8 (35-89)||(26215424-26215478)
chr8 (35-109)||(10114418-10114491)
chr8 (39-105)||(13652147-13652213)
chr8 (39-105)||(13710790-13710856)
chr8 (44-109)||(1112790-1112855)
chr8 (48-109)||(1470924-1470985)
chr8 (35-104)||(41475133-41475202)
chr8 (40-88)||(1929984-1930032)
chr8 (40-108)||(7514511-7514579)
chr8 (57-109)||(35374441-35374493)
chr8 (45-109)||(42597339-42597403)
chr8 (100-142)||(4558742-4558785)
chr8 (46-105)||(29056063-29056122)
chr8 (35-97)||(37353329-37353390)
chr8 (35-76)||(27492887-27492928)
chr8 (38-86)||(8060593-8060641)
[»] scaffold0024 (2 HSPs)
scaffold0024 (35-107)||(21348-21420)
scaffold0024 (39-109)||(27508-27578)
[»] chr2 (23 HSPs)
chr2 (38-109)||(18066059-18066130)
chr2 (35-97)||(42457876-42457938)
chr2 (36-107)||(44600468-44600541)
chr2 (38-109)||(25609727-25609798)
chr2 (48-103)||(40837502-40837557)
chr2 (35-109)||(43570344-43570416)
chr2 (39-109)||(2416245-2416315)
chr2 (35-97)||(3611154-3611216)
chr2 (39-109)||(18962106-18962176)
chr2 (35-97)||(42420374-42420436)
chr2 (38-105)||(3673738-3673805)
chr2 (109-140)||(42457902-42457933)
chr2 (35-89)||(4026745-4026799)
chr2 (260-344)||(7928227-7928313)
chr2 (35-109)||(9395058-9395132)
chr2 (37-67)||(15288716-15288746)
chr2 (38-108)||(17952770-17952840)
chr2 (39-73)||(40682477-40682511)
chr2 (44-105)||(5133709-5133770)
chr2 (39-108)||(11393724-11393793)
chr2 (39-108)||(11410385-11410454)
chr2 (45-98)||(44119722-44119775)
chr2 (35-67)||(32364834-32364866)
[»] chr3 (34 HSPs)
chr3 (35-105)||(402614-402683)
chr3 (35-107)||(34638034-34638107)
chr3 (35-97)||(30573994-30574054)
chr3 (38-107)||(905040-905109)
chr3 (38-97)||(2128331-2128390)
chr3 (46-109)||(32703077-32703140)
chr3 (48-107)||(42809242-42809301)
chr3 (38-109)||(44061091-44061162)
chr3 (47-109)||(1395611-1395673)
chr3 (38-112)||(41028916-41028990)
chr3 (35-109)||(50952262-50952334)
chr3 (52-104)||(15304420-15304472)
chr3 (57-109)||(33405235-33405287)
chr3 (35-110)||(36783401-36783477)
chr3 (41-109)||(37689452-37689519)
chr3 (45-105)||(52597626-52597686)
chr3 (35-67)||(54194447-54194479)
chr3 (50-105)||(52618946-52619001)
chr3 (35-109)||(25447312-25447386)
chr3 (35-97)||(35127451-35127513)
chr3 (36-86)||(35394792-35394842)
chr3 (51-109)||(49586984-49587042)
chr3 (35-76)||(2304342-2304383)
chr3 (44-109)||(8007763-8007828)
chr3 (52-105)||(10101548-10101601)
chr3 (52-105)||(10212473-10212526)
chr3 (35-76)||(23815981-23816022)
chr3 (52-97)||(30956706-30956751)
chr3 (52-97)||(30972518-30972563)
chr3 (32-105)||(35328236-35328308)
chr3 (35-67)||(20669107-20669139)
chr3 (101-140)||(30956711-30956751)
chr3 (101-140)||(30972523-30972563)
chr3 (53-97)||(36631131-36631175)
[»] chr4 (31 HSPs)
chr4 (32-109)||(51630036-51630113)
chr4 (37-97)||(7601689-7601749)
chr4 (44-112)||(25487610-25487678)
chr4 (35-109)||(49004040-49004112)
chr4 (47-97)||(3155543-3155593)
chr4 (35-109)||(26520297-26520371)
chr4 (44-109)||(30338660-30338725)
chr4 (45-109)||(40174503-40174565)
chr4 (37-109)||(6364079-6364151)
chr4 (49-101)||(7731712-7731764)
chr4 (35-75)||(17751224-17751264)
chr4 (45-109)||(30024638-30024702)
chr4 (44-103)||(9680601-9680660)
chr4 (38-109)||(18630611-18630682)
chr4 (46-109)||(44119230-44119293)
chr4 (44-105)||(437504-437566)
chr4 (44-109)||(8422907-8422970)
chr4 (35-109)||(11389454-11389528)
chr4 (47-105)||(49803151-49803209)
chr4 (100-140)||(3155547-3155588)
chr4 (36-109)||(26883924-26883997)
chr4 (109-142)||(40532955-40532988)
chr4 (45-110)||(54392886-54392950)
chr4 (39-107)||(7368126-7368194)
chr4 (100-140)||(11802479-11802519)
chr4 (46-86)||(21193937-21193977)
chr4 (44-112)||(22684581-22684649)
chr4 (57-109)||(23459578-23459630)
chr4 (41-109)||(27043898-27043966)
chr4 (45-109)||(44007940-44008004)
chr4 (35-67)||(53137967-53137999)
[»] chr7 (18 HSPs)
chr7 (45-107)||(27121656-27121718)
chr7 (44-105)||(35536044-35536105)
chr7 (56-109)||(40689054-40689107)
chr7 (44-109)||(45813248-45813313)
chr7 (35-67)||(33552931-33552963)
chr7 (32-68)||(33673003-33673039)
chr7 (46-109)||(48157188-48157251)
chr7 (46-108)||(2012683-2012745)
chr7 (46-108)||(2030648-2030710)
chr7 (38-108)||(22759117-22759187)
chr7 (35-109)||(47177564-47177638)
chr7 (51-104)||(35266843-35266896)
chr7 (109-142)||(40689069-40689102)
chr7 (49-109)||(43152969-43153030)
chr7 (46-106)||(1417203-1417263)
chr7 (37-97)||(8960707-8960767)
chr7 (32-76)||(19214492-19214536)
chr7 (39-107)||(33894555-33894622)
[»] scaffold0590 (1 HSPs)
scaffold0590 (38-86)||(1165-1213)
[»] scaffold0275 (1 HSPs)
scaffold0275 (38-86)||(2762-2810)


Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 30 - 494
Target Start/End: Original strand, 34112798 - 34113263
Alignment:
Q  30 gcattatgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctattctatagtaaaagataaaat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34112798 gcattatgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctattctatagtaaaagataaaat 34112897  T
Q  130 aaagttaaattatgcatagactatttgagaaatatttgaaaataagctgaaaactgcttataagcattgttataagctgtttt-ttataagttcttagct 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34112898 aaagttaaattatgcatagactatttgagaaatatttgaaaataagctgaaaactgcttataagcattgttataagctgtttttttataagttcttagct 34112997  T
Q  229 caaataagttagtccaaacaggcccatattgcttatgaacaatgttataatctgttttcaaaagttctatctacagtgtcacaaaatgtatgccattaga 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34112998 caaataagttagtccaaacaggcccatattgcttatgaacaatgttataatctgttttcaaaagttctatctacagtgtcacaaaatgtatgccattaga 34113097  T
Q  329 taagttcaaataagcccataatgtgaaaattgagtgaaactttgaagcttgtggtgtgtaattctaatnnnnnnncaatttttattgatgattgtaagtt 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  34113098 taagttcaaataagcccataatgtgaaaattgagtgaaactttgaagcttgtggtgtgtaattctaataaaaaaacaatttttattgatgattgtaagtt 34113197  T
Q  429 tcaactttgtttgagactggtagtataatgtttttgtacgtttttgttttataggtgttctctgtg 494  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34113198 tcaactttgtttgagactggtagtataatgtttttgtacttttttgttttataggtgttctctgtg 34113263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 12425499 - 12425573
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||| ||||||||||||| |||||| ||||||||||||| || ||||||||| |||||||| ||||||||||    
T  12425499 atgataaacgcttatgtataaactatttatatagtaaaagataaaataaagttaaattgttttcgtataagctat 12425573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 9202890 - 9202819
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagc 106  Q
    |||||||| |||||| |||||||||||||| ||| ||||||| || ||||||||| ||||||||||||||||    
T  9202890 atgataagtgcttatatataagctatttctgtagcaaaagataaaataaagttaaattgttttcatataagc 9202819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 11700092 - 11700162
Alignment:
Q  37 gataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagct 107  Q
    |||||| ||||||||||||||||||||||||  |||| || ||||||||||| ||||||||| ||||||||    
T  11700092 gataagtgcttatgtataagctatttctatataaaaaaataaattaaagttatgttgttttcgtataagct 11700162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 39105392 - 39105466
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||||||||||||||||||||||||||  ||| || || | ||||||| |||||||| ||||||||||    
T  39105392 atgataagcgcttatgtataagctatttctatagctaaatatgaaatgaagttaaattgttttcgtataagctat 39105466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 706394 - 706445
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaa 89  Q
    ||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  706394 ataagcgcttatgtataagctatttctatagtaaaagataaaatatagttaa 706445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 4014566 - 4014504
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    ||||||||||| |||||||||||||||||||||| ||||||| || ||||||||  |||||||    
T  4014566 atgataagcgcctatgtataagctatttctatagcaaaagataaaataaagttagattgtttt 4014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 42569122 - 42569048
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||||| | ||||||||||||||| ||||||| || ||||||  | |||||||| ||||||||||    
T  42569122 atgataagcgcttatgaaaaagctatttctatagcaaaagataaaataaagtctaattgttttcgtataagctat 42569048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 42573921 - 42573877
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaa 79  Q
    |||||||||||||||||||||||||||||||||  ||||||||||    
T  42573921 atgataagcgcttatgtataagctatttctataacaaaagattaa 42573877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 7674576 - 7674647
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagc 106  Q
    ||||||||| ||||| |||||||||||||||||  ||||||| || |||| |||| |||||||| |||||||    
T  7674576 atgataagcacttatatataagctatttctataccaaaagataaaataaatttaaattgttttcttataagc 7674647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 40590457 - 40590508
Alignment:
Q  37 gataagcgcttatgtataagctatttctatagtaaaagattaattaaagtta 88  Q
    ||||||||||||||||||||||| |||||||| ||||||| || ||||||||    
T  40590457 gataagcgcttatgtataagctacttctatagaaaaagataaaataaagtta 40590508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 5963424 - 5963362
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    |||||||||||||||||| || ||||||||||| | |||||| || ||||||||| |||||||    
T  5963424 atgataagcgcttatgtacaaactatttctataatgaaagataaaataaagttaaattgtttt 5963362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 37112395 - 37112338
Alignment:
Q  40 aagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    |||||||||||||||||||||||||| || ||||||| ||  |||||||| |||||||    
T  37112395 aagcgcttatgtataagctatttctacagcaaaagataaaacaaagttaaattgtttt 37112338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 465882 - 465954
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagct 107  Q
    ||||||||| ||||| ||||||||||||||||   ||||||| || ||||||||| |||||||  ||||||||    
T  465882 atgataagcacttatatataagctatttctatgacaaaagataaaataaagttaaattgtttttgtataagct 465954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 1465159 - 1465107
Alignment:
Q  37 gataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaa 89  Q
    |||||||||||||||||||||||||||||||| | | ||| || |||||||||    
T  1465159 gataagcgcttatgtataagctatttctatagcataggataaaataaagttaa 1465107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 5559658 - 5559702
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaa 79  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||    
T  5559658 atgataagcgcttgtgtatgagttatttctatagtaaaagattaa 5559702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 11054117 - 11054165
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagt 86  Q
    |||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  11054117 ataaacgcttatgtataagctatttctataataaaagataaaataaagt 11054165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 42582843 - 42582899
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgt 94  Q
    |||||||||||||||||||||||||| ||  |||||||| || ||||||||| ||||    
T  42582843 ataagcgcttatgtataagctatttccatgataaaagatgaaataaagttaaattgt 42582899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 706407 - 706450
Alignment:
Q  100 tataagctatt-ctatagtaaaagataaaataaagttaaattat 142  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  706407 tataagctatttctatagtaaaagataaaatatagttaaattat 706450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 14714970 - 14714909
Alignment:
Q  46 ttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagcta 108  Q
    ||||||||||||||||||||||  |||| || ||  ||||||||| |||||||||||||||||    
T  14714970 ttatgtataagctatttctataacaaaacataaac-aaagttaagctgttttcatataagcta 14714909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 19460528 - 19460466
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    ||||||||| ||||||||||| |||||||||||  |||| ||| | ||||||||| |||||||    
T  19460528 atgataagcacttatgtataaactatttctatatcaaaacattgaataaagttaaattgtttt 19460466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 40848685 - 40848755
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    ||||||||| ||||||||||| ||||||||| || ||||||| || | ||| ||  |||||||||||||||    
T  40848685 atgataagcacttatgtataaactatttctagagcaaaagatgaaatgaagatagattgttttcatataag 40848755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 32022004 - 32022053
Alignment:
Q  40 aagcgcttatgtataagctatttctatagtaaaagattaattaaagttaa 89  Q
    ||||||||||| |||||||| || ||||| ||||||| ||||||||||||    
T  32022004 aagcgcttatgcataagctagttttatagcaaaagataaattaaagttaa 32022053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 32172590 - 32172655
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||| ||||||||| |  ||||||| || | |||| ||||||||| ||||||||||||    
T  32172590 gcttatgtataaactatttctacaacaaaagataaaatgaagtcaagttgtttacatataagctat 32172655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 39248028 - 39248061
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatag 68  Q
    |||||||||||||||||| |||||||||||||||    
T  39248028 atgataagcgcttatgtaaaagctatttctatag 39248061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 9927524 - 9927584
Alignment:
Q  46 ttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagc 106  Q
    ||||||||||| ||||| ||||||||||||| || | | || || ||||||||||||||||    
T  9927524 ttatgtataagttatttgtatagtaaaagataaaattacgtcaaattgttttcatataagc 9927584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 12425528 - 12425556
Alignment:
Q  112 tatagtaaaagataaaataaagttaaatt 140  Q
    |||||||||||||||||||||||||||||    
T  12425528 tatagtaaaagataaaataaagttaaatt 12425556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 16945120 - 16945051
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||| |||||||||||||||||||||| |  ||||||| ||  | |||||| ||||||||||| |||||||    
T  16945120 ataagtgcttatgtataagctatttctacaagaaaagataaa--atagttaaattgttttcatagaagctat 16945051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 28776903 - 28776955
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagtt 87  Q
    |||||||| ||||||||||||||||||| ||| | ||||||| || |||||||    
T  28776903 atgataagtgcttatgtataagctatttttattgaaaaagataaaataaagtt 28776955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 42100371 - 42100455
Alignment:
Q  264 tgaacaatgttataatctgttttcaaaagttctatct-acagtgtcacaaaatgtatgccattagataagttcaaataagcccat 347  Q
    ||||| |||| |||| || |||||| ||||||| ||  |||||  |||||||| ||||||| |||||||| ||||||||||||||    
T  42100371 tgaactatgtcataagctattttcacaagttctctcacacagtcacacaaaatttatgccaatagataagctcaaataagcccat 42100455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 23544782 - 23544707
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctatt 110  Q
    |||||||||||||||||||||||||||||||| | ||||||| || | |||| || ||||||||||||||||||||    
T  23544782 atgataagcgcttatgtataagctatttctatggaaaaagataaaattaagtcaaattgttttcatataagctatt 23544707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 15784260 - 15784336
Alignment:
Q  32 attatgataagcgcttatgtataagctatttctatagt-aaaagattaattaaagttaagttgttttcatataagct 107  Q
    |||||||||||||||||||||||||||||||||| ||| ||||| | || ||||||||| |||||||| ||||||||    
T  15784260 attatgataagcgcttatgtataagctatttctaaagtaaaaaggtaaaataaagttaaattgttttcgtataagct 15784336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 7028229 - 7028292
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagct 107  Q
    |||||||||||| |||||||||||| ||||||| || |||||||||||||||||  ||||||||    
T  7028229 gcttatgtataaactatttctatagcaaaagataaaataaagttaagttgtttttgtataagct 7028292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 29793711 - 29793784
Alignment:
Q  36 tgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||| ||||||||| |||||||||||| |  ||||||| |  |||||||||||||||||| ||||||||||    
T  29793711 tgataagtgcttatgtacaagctatttctacaacaaaagataacataaagttaagttgttttcgtataagctat 29793784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 50319230 - 50319286
Alignment:
Q  45 cttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcata 101  Q
    |||||||||||||||||||||||  ||||||| || |||||| ||||||||||||||    
T  50319230 cttatgtataagctatttctataacaaaagataaaataaagtcaagttgttttcata 50319286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 1432446 - 1432517
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||| | |||||||||||||||||||||||||||||| || || |||| | |||||||  ||||||||||    
T  1432446 ataagcacatatgtataagctatttctatagtaaaagataaaatagagttcaattgtttttttataagctat 1432517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 9572250 - 9572176
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||| |||||| |||||| |||||||||||||| ||||||| || ||||||||| ||| |||  ||||||||||    
T  9572250 atgatcagcgctaatgtattagctatttctatagcaaaagataaaataaagttaaattgcttttgtataagctat 9572176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 48748715 - 48748659
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcata 101  Q
    ||||||||||||||||||||||||  ||||||| || ||||||||| |||||||||||    
T  48748715 gcttatgtataagctatttctata-caaaagatgaaataaagttaaattgttttcata 48748659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 49888705 - 49888770
Alignment:
Q  45 cttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctatt 110  Q
    |||||||||||||||||||| | | ||||||| || ||||||| | |||||||| |||||||||||    
T  49888705 cttatgtataagctatttctttggaaaaagataaaataaagtttaattgttttcgtataagctatt 49888770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 4200168 - 4200231
Alignment:
Q  46 ttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||| |||||| ||||| ||||  ||||||| || |||||| ||||||||||||||||||||||    
T  4200168 ttatatataagttatttttataacaaaagataaaataaagtcaagttgttttcatataagctat 4200231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 66
Target Start/End: Complemental strand, 5894305 - 5894274
Alignment:
Q  35 atgataagcgcttatgtataagctatttctat 66  Q
    ||||||||||||||||||||||||||||||||    
T  5894305 atgataagcgcttatgtataagctatttctat 5894274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 6074417 - 6074476
Alignment:
Q  50 gtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||||||||||  ||||||| |  |||||||||  ||||||||||||||||||    
T  6074417 gtataagctatttctataacaaaagatgatataaagttaaactgttttcatataagctat 6074476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 140
Target Start/End: Original strand, 15477532 - 15477563
Alignment:
Q  109 ttctatagtaaaagataaaataaagttaaatt 140  Q
    ||||||||||||||||||||||||||||||||    
T  15477532 ttctatagtaaaagataaaataaagttaaatt 15477563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 44928295 - 44928224
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||| ||||||||||||||||||||  | | ||||||| |  |||||| ||| ||||||||||||||||||    
T  44928295 ataagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcatataagctat 44928224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 10280596 - 10280646
Alignment:
Q  54 aagctatttctatagtaaaagattaattaaagttaagttgttttcatataa 104  Q
    ||||||||||||||  ||||||| || |||||||||||||||| |||||||    
T  10280596 aagctatttctataacaaaagataaagtaaagttaagttgtttccatataa 10280646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 37841926 - 37842000
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||  || |||||||||||||| |||||  ||| ||| || ||||||||| |||||||| ||||||||||    
T  37841926 atgataagtactcatgtataagctattcctataacaaatgataaaataaagttaaattgttttcgtataagctat 37842000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 37842485 - 37842443
Alignment:
Q  47 tatgtataagctatttctatagtaaaagattaattaaagttaa 89  Q
    |||||||||||||||||||||| ||||||| || |||||||||    
T  37842485 tatgtataagctatttctatagcaaaagatgaaataaagttaa 37842443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 1255564 - 1255507
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcata 101  Q
    ||||||||| ||||||||||||||||||||||| || | |||| || || ||||||||    
T  1255564 gcttatgtagaagctatttctatagtaaaagatgaaatgaagtcaaattcttttcata 1255507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 3887765 - 3887720
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaa 89  Q
    |||||||||||||||||||| |||| ||||||| || |||||||||    
T  3887765 gcttatgtataagctatttcaatagcaaaagataaaataaagttaa 3887720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 9656574 - 9656652
Alignment:
Q  35 atgataagcgcttatgtataagctatt----tctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||| | |||||||||||||||    ||||||| |||| || || ||||||||| || ||||||||||||||||    
T  9656574 atgataagcacctatgtataagctatttatttctatagcaaaaaataaaataaagttaaattattttcatataagctat 9656652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 15942261 - 15942302
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagat 76  Q
    |||||||| ||||||||||||||||||| ||||| |||||||    
T  15942261 atgataagtgcttatgtataagctatttatatagaaaaagat 15942302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 34619511 - 34619446
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||| |||||||||  ||||||| || ||| ||||| |||||||  ||||||||||    
T  34619511 gcttatgtataagccatttctataacaaaagataaaataaggttaaattgtttttgtataagctat 34619446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 38116327 - 38116294
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatag 68  Q
    ||||||||||||||||||||||||||||| ||||    
T  38116327 atgataagcgcttatgtataagctatttcaatag 38116294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 38160135 - 38160071
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||| ||||||| || ||||||| || ||||||| | |||||||| ||||||||||    
T  38160135 gcttatgtataagccatttctagag-aaaagataaactaaagttcaattgttttcgtataagctat 38160071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 41163145 - 41163072
Alignment:
Q  36 tgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||||||| || ||||| ||| | ||||||| || | ||||||| ||| |||| ||||||||||    
T  41163145 tgataagcgcttatgtatgagttatttttattgcaaaagataaaatgaagttaaattgctttcgtataagctat 41163072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 44251372 - 44251405
Alignment:
Q  109 ttctatagtaaaagataaaataaagttaaattat 142  Q
    ||||||| ||||||||||||||||||||||||||    
T  44251372 ttctataataaaagataaaataaagttaaattat 44251405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 45990187 - 45990126
Alignment:
Q  48 atgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||| ||||||| ||||  ||||||| || |||||| || |||||||||||||||||||    
T  45990187 atgtatatgctatttttatatcaaaagataaaataaagtaaaattgttttcatataagctat 45990126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 46499993 - 46499924
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagct 107  Q
    ||||| |||||| |||||||||||||||||  ||||||| || |||||| || ||||||| || ||||||    
T  46499993 ataagtgcttatctataagctatttctataagaaaagataaaataaagtcaaattgtttttatttaagct 46499924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 172709 - 172646
Alignment:
Q  45 cttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||||||||||||  ||||||| |  |||||||||||| ||||| |||| |||||    
T  172709 cttatgtataagctatttctataacaaaagataacataaagttaagtt-ttttcttataggctat 172646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 4549803 - 4549867
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagcta 108  Q
    ||||||||| ||||||||||||||  ||||||| || ||||||||| |||| |||| | ||||||    
T  4549803 gcttatgtacaagctatttctataacaaaagataaaataaagttaaattgtcttcaaacaagcta 4549867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 15687206 - 15687142
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagcta 108  Q
    ||||| ||| ||||||||||||||  |||| || || ||||||||| |||||||| |||||||||    
T  15687206 gcttaagtacaagctatttctataacaaaatataaaataaagttaaattgttttcgtataagcta 15687142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 38758578 - 38758514
Alignment:
Q  46 ttatgtataagctatttcta-tagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||||| |||||| || |||||||| || |||| | ||||||||||||||||| ||||    
T  38758578 ttatgtataagctgtttctaataataaaagatgaaataaaatcaagttgttttcatataaactat 38758514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 38867959 - 38867907
Alignment:
Q  51 tataagctatttctatagtaaaagattaattaaagttaagttgttttcatata 103  Q
    |||||||||||||||||  |||||||||| |||||| ||  ||||||||||||    
T  38867959 tataagctatttctataccaaaagattaaataaagtcaaaatgttttcatata 38867907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 9093698 - 9093624
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||||| ||||||||||||||||  ||||||| || ||||||||| |||||||| ||||||||||    
T  9093698 atgataagcgcttatggataagctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctat 9093624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 29274362 - 29274297
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||||||||||||||||| ||||||| || |||||| || |||||||||||||||||||    
T  29274362 gcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctat 29274297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 9559681 - 9559620
Alignment:
Q  37 gataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttc 98  Q
    |||||||||||||||||||| ||||||||||| ||||||| || |||| |||| ||||||||    
T  9559681 gataagcgcttatgtataagttatttctatagcaaaagataaaataaatttaaattgttttc 9559620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 264299 - 264374
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctatt 110  Q
    |||||||| |||||| ||||||||||||||| || ||||||| || ||||||||| | |||||| | |||||||||    
T  264299 atgataagtgcttatatataagctatttctaaagcaaaagataaaataaagttaaatcgttttcgtctaagctatt 264374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 24476530 - 24476601
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagc 106  Q
    ||||||| | |||||||||||||||||||||||| ||||||| || |  |||||| || |||||||||||||    
T  24476530 atgataaacacttatgtataagctatttctatagcaaaagataaaatgtagttaaattattttcatataagc 24476601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 103391 - 103447
Alignment:
Q  45 cttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcata 101  Q
    |||| ||||||||||||||||||| ||||||| |  | |||||||||||||||||||    
T  103391 cttacgtataagctatttctatagcaaaagataatatgaagttaagttgttttcata 103447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 2514634 - 2514681
Alignment:
Q  39 taagcgcttatgtataagctatttctatagtaaaagattaattaaagt 86  Q
    |||| |||||||||||||||||||||||| |||||||| || ||||||    
T  2514634 taagtgcttatgtataagctatttctataataaaagataaaataaagt 2514681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 4578208 - 4578137
Alignment:
Q  32 attatgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatata 103  Q
    |||||||| ||| |||||| |||| ||||||||| || ||||||| |||| | ||||| |||||||||||||    
T  4578208 attatgatgagcacttatgcataaactatttctacagcaaaagataaatttatgttaaattgttttcatata 4578137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 10749358 - 10749300
Alignment:
Q  46 ttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    ||||||||||| |||||||||| |||||||| || ||||||||| || ||||||||||||    
T  10749358 ttatgtataag-tatttctataataaaagataaaataaagttaaattattttcatataag 10749300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 281974 - 281916
Alignment:
Q  51 tataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||| |||||  ||||||| || |||||| || |||||||||||||||||||    
T  281974 tataagctattcctataacaaaagataaaataaagtcaacttgttttcatataagctat 281916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 7351741 - 7351675
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctatt 110  Q
    |||||||||||| |||||| |||| ||||  || || |||||||||  |||||||||||||||||||    
T  7351741 gcttatgtataaactatttatataataaactataaaataaagttaaactgttttcatataagctatt 7351675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 10749344 - 10749311
Alignment:
Q  109 ttctatagtaaaagataaaataaagttaaattat 142  Q
    ||||||| ||||||||||||||||||||||||||    
T  10749344 ttctataataaaagataaaataaagttaaattat 10749311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 20671996 - 20671935
Alignment:
Q  46 ttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagct 107  Q
    |||||||||||||||||||| |  ||||||| || |||||| || |||||||| ||||||||    
T  20671996 ttatgtataagctatttctagatcaaaagataaaataaagtcaaattgttttcgtataagct 20671935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 21959665 - 21959730
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||| |||||||||||||| |||  ||||||| || |||||| || |||||| ||||||||||||    
T  21959665 gcttaagtataagctatttccataacaaaagataaaataaagtcaatttgtttgcatataagctat 21959730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 323753 - 323809
Alignment:
Q  49 tgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    ||||||||||||||||||| |||||||| || |||| | ||  ||||||||||||||    
T  323753 tgtataagctatttctatattaaaagataaaataaattcaaactgttttcatataag 323809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 430508 - 430464
Alignment:
Q  45 cttatgtataagctatttctatagtaaaagattaattaaagttaa 89  Q
    |||||||||||||||||||||||  ||||||| || |||||||||    
T  430508 cttatgtataagctatttctatataaaaagatgaaataaagttaa 430464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 1402942 - 1402998
Alignment:
Q  53 taagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||||  ||||||| || |||||||||  | ||||||||||||||||    
T  1402942 taagctatttctataacaaaagataaaataaagttaaactattttcatataagctat 1402998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 4081545 - 4081513
Alignment:
Q  100 tataagctattctatagtaaaagataaaataaa 132  Q
    |||||||||||||||| ||||||||||||||||    
T  4081545 tataagctattctataataaaagataaaataaa 4081513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 22742304 - 22742368
Alignment:
Q  45 cttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||| |||||||||||| ||||  ||| ||| || |||||| || |||||||||||||||||||    
T  22742304 cttatctataagctatttgtataacaaaggataaaataaagtcaaattgttttcatataagctat 22742368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 14280542 - 14280469
Alignment:
Q  36 tgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||||||||| |||||||||||| ||||||| || | || |||| |||||||||||||||||||    
T  14280542 tgataagcgcttatgtataacctatttctatagcaaaagataaaattaaattaaattgttttcatataagctat 14280469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 37444557 - 37444485
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagct 107  Q
    ||||||||||||||||||||||||||| |||||  ||||||| || ||||||||| |||||||| ||||||||    
T  37444557 atgataagcgcttatgtataagctattactataacaaaagataaagtaaagttaaattgttttcgtataagct 37444485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 16211028 - 16210954
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||| || || ||||||||||||||||||||||||| ||| || ||||||||  |||||||||||||||||||    
T  16211028 atgatacgcactcatgtataagctatttctatagtaaatgataaaataaagttacattgttttcatataagctat 16210954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 4558737 - 4558800
Alignment:
Q  46 ttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||||||||||| |||||||| || ||||||||| || |||||||||| |||||    
T  4558737 ttatgtataagctatttctataataaaagataaaataaagttaaattattttcatatatgctat 4558800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 26215424 - 26215478
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaa 89  Q
    |||||||||||||||||||||||||||||||||  ||||||| || |||||||||    
T  26215424 atgataagcgcttatgtataagctatttctataacaaaagataaaataaagttaa 26215478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 10114418 - 10114491
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||| ||||||||||||||||||||||||| ||||||| || | ||||| | |||||||  ||||||||||    
T  10114418 atgataagtgcttatgtataagctatttctatagcaaaagataaaat-aagttgaattgttttggtataagctat 10114491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 13652147 - 13652213
Alignment:
Q  39 taagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    |||| ||||||||||||||||||||||||| |||||||  | | |||| || |||||||||||||||    
T  13652147 taagtgcttatgtataagctatttctatagcaaaagatggaatgaagtgaaattgttttcatataag 13652213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 13710790 - 13710856
Alignment:
Q  39 taagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    |||| ||||||||||||||||||||||||| |||||||  | | |||| || |||||||||||||||    
T  13710790 taagtgcttatgtataagctatttctatagcaaaagatggaatgaagtgaaattgttttcatataag 13710856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 1112790 - 1112855
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||| ||||||||||||  ||||||| || ||| ||||| ||||||||| |||||||||    
T  1112790 gcttatgtatatgctatttctataacaaaagataaaataaggttaaattgttttcacataagctat 1112855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 1470985 - 1470924
Alignment:
Q  48 atgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||||||||| |||||||| || |||||| || ||  |||||||||||||||    
T  1470985 atgtataagctatttctataataaaagataaaataaagtcaaattactttcatataagctat 1470924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 41475202 - 41475133
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataa 104  Q
    ||||||||| ||||||||||||||| || ||||| ||||||| || || |||||| |||||||| |||||    
T  41475202 atgataagcacttatgtataagctaattttatagcaaaagataaaatacagttaaattgttttcgtataa 41475133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 1929984 - 1930032
Alignment:
Q  40 aagcgcttatgtataagctatttctatagtaaaagattaattaaagtta 88  Q
    ||||||||||||||||| ||||||||||| ||||||| || ||||||||    
T  1929984 aagcgcttatgtataagttatttctatagaaaaagataaaataaagtta 1930032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 7514511 - 7514579
Alignment:
Q  40 aagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagcta 108  Q
    |||| |||||||||||||||||||||||| ||||  | || ||| ||| | ||||||||||||||||||    
T  7514511 aagcccttatgtataagctatttctatagcaaaaactaaaataatgttcaattgttttcatataagcta 7514579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 35374493 - 35374441
Alignment:
Q  57 ctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||||  |||||| || ||||||||| |||||||||||||||||||    
T  35374493 ctatttctatagcgaaagataaaataaagttaaattgttttcatataagctat 35374441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 42597339 - 42597403
Alignment:
Q  45 cttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||||||||||||  ||||||| || |||||| || ||||||||||  |||||||    
T  42597339 cttatgtataagctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctat 42597403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 4558742 - 4558785
Alignment:
Q  100 tataagctatt-ctatagtaaaagataaaataaagttaaattat 142  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||    
T  4558742 tataagctatttctataataaaagataaaataaagttaaattat 4558785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 29056122 - 29056063
Alignment:
Q  46 ttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    |||||||||||||| ||||| || ||||||| || |||||| || |||||||||||||||    
T  29056122 ttatgtataagctacttctagagcaaaagataaaataaagtcaatttgttttcatataag 29056063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 37353390 - 37353329
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    |||||||||||||||||| || |||||||||||  |||||| ||| ||||||||| |||||||    
T  37353390 atgataagcgcttatgtacaaactatttctataacaaaaga-taaataaagttaaattgtttt 37353329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 27492887 - 27492928
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagat 76  Q
    ||||||||| |||||||||||| ||||||||||| |||||||    
T  27492887 atgataagcacttatgtataaggtatttctatagcaaaagat 27492928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 8060593 - 8060641
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagt 86  Q
    ||||| |||||| ||||||||||||||||| ||||  ||||||||||||    
T  8060593 ataagtgcttatatataagctatttctatactaaagcattaattaaagt 8060641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 21420 - 21348
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagct 107  Q
    ||||||||| |||||||||||||||||| ||||| ||||||| || ||||||||| |||||||| ||||||||    
T  21420 atgataagcacttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagct 21348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 27508 - 27578
Alignment:
Q  39 taagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||| ||||||||||||| ||||||||||  | ||||| || |||||| || |||||||||||||| ||||    
T  27508 taagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactat 27578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 18066059 - 18066130
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||| ||||| |||||||||||| ||||||| || || ||||||||| |||||||||||||||||||    
T  18066059 ataagcgctcatgtagaagctatttctacagtaaaatatgaaataaagttaaattgttttcatataagctat 18066130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 42457876 - 42457938
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    |||||||||  |||||||||| |||||||||||||||||||| || ||||||||| |||||||    
T  42457876 atgataagcatttatgtataatctatttctatagtaaaagataaaataaagttaaattgtttt 42457938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 44600468 - 44600541
Alignment:
Q  36 tgataagcgcttatgtataagctatttctatag--taaaagattaattaaagttaagttgttttcatataagct 107  Q
    ||||||| |||||||||||||||||||||||||   ||||||| || ||||||||| | |||||||||||||||    
T  44600468 tgataagtgcttatgtataagctatttctatagccaaaaagataaaataaagttaaatagttttcatataagct 44600541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 25609727 - 25609798
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||| ||||||||||||||||||||||||  ||||||| || |||||| || || ||||| ||||||||||    
T  25609727 ataagtgcttatgtataagctatttctataagaaaagataaaataaagtcaatttattttcgtataagctat 25609798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 40837557 - 40837502
Alignment:
Q  48 atgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatata 103  Q
    ||||||||||||||||||||  ||||||| ||||||||| || |||||||||||||    
T  40837557 atgtataagctatttctataacaaaagataaattaaagtcaaattgttttcatata 40837502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 43570344 - 43570416
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||  |||||||||| ||||||||||||| || || | ||||||| |||||||||| ||||||||    
T  43570344 atgataagcgctt--gtataagctaattctatagtaaaatataaaatgaagttaaattgttttcatttaagctat 43570416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 2416245 - 2416315
Alignment:
Q  39 taagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||| ||||||||||||| ||||||| ||| ||||||| || | ||||||| ||||||| |||||||||||    
T  2416245 taagtgcttatgtataagttatttctgtagcaaaagataaaatgaagttaaattgttttgatataagctat 2416315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 3611154 - 3611216
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    |||||||| ||||||||||||| ||||||||||| ||||| | || ||||||||| |||||||    
T  3611154 atgataagtgcttatgtataagttatttctatagcaaaaggtaaaataaagttaaattgtttt 3611216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 18962176 - 18962106
Alignment:
Q  39 taagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||| |||||||||| |||||||| ||||  ||||||| || |||||||||  ||||||||||||||||||    
T  18962176 taagtgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagctat 18962106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 42420436 - 42420374
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    |||||||||||||| ||||||||||||| ||||| ||||||| || ||| ||||| |||||||    
T  42420436 atgataagcgcttacgtataagctatttttatagcaaaagataaaataacgttaaattgtttt 42420374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 3673738 - 3673805
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    ||||| |||||||||| || ||||||||||  |||| || || ||||||||| |||||||||||||||    
T  3673738 ataagtgcttatgtattagttatttctataacaaaatataaaataaagttaaattgttttcatataag 3673805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 140
Target Start/End: Original strand, 42457902 - 42457933
Alignment:
Q  109 ttctatagtaaaagataaaataaagttaaatt 140  Q
    ||||||||||||||||||||||||||||||||    
T  42457902 ttctatagtaaaagataaaataaagttaaatt 42457933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 4026745 - 4026799
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaa 89  Q
    |||||||| |||||| |||||||||||| ||||| ||||||| || |||||||||    
T  4026745 atgataagtgcttatctataagctatttttatagcaaaagataaaataaagttaa 4026799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 344
Target Start/End: Complemental strand, 7928313 - 7928227
Alignment:
Q  260 cttatgaacaatgtt-ataatctgttttcaaaagttctatct-acagtgtcacaaaatgtatgccattagataagttcaaataagcc 344  Q
    ||||||||||||||  |||| ||||||||||||||||| ||| ||||| ||||| ||  |||| || |||||||| |||||||||||    
T  7928313 cttatgaacaatgtccataagctgttttcaaaagttctttctaacagtctcacacaacttatgtcaatagataagctcaaataagcc 7928227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 9395058 - 9395132
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||| | || ||||||||| | ||||||||| ||||||| || ||||| ||| |||||||||||||| ||||    
T  9395058 atgataaacactcatgtataagatttttctatagaaaaagataaaataaagctaaattgttttcatataatctat 9395132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 15288746 - 15288716
Alignment:
Q  37 gataagcgcttatgtataagctatttctata 67  Q
    |||||||||||||||||||||||||||||||    
T  15288746 gataagcgcttatgtataagctatttctata 15288716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 17952840 - 17952770
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagcta 108  Q
    ||||| |||||| |||||||||||||||||  ||||||| || |||||| ||  | |||||||||||||||    
T  17952840 ataagagcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagcta 17952770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 40682511 - 40682477
Alignment:
Q  39 taagcgcttatgtataagctatttctatagtaaaa 73  Q
    |||||||||||||||||||||||||||||| ||||    
T  40682511 taagcgcttatgtataagctatttctatagcaaaa 40682477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 5133709 - 5133770
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    ||||||||||||||||||||||||  ||||||| || ||||| |||  |||||| |||||||    
T  5133709 gcttatgtataagctatttctataacaaaagataaaataaagataaactgtttttatataag 5133770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 11393793 - 11393724
Alignment:
Q  39 taagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagcta 108  Q
    |||| ||||||||||||||||||||||||  |||||||  | ||||| ||| | || |||||||||||||    
T  11393793 taagtgcttatgtataagctatttctataccaaaagatacaataaagctaaatcgtcttcatataagcta 11393724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 11410454 - 11410385
Alignment:
Q  39 taagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagcta 108  Q
    |||| ||||||||||||||||||||||||  |||||||  | ||||| ||| | || |||||||||||||    
T  11410454 taagtgcttatgtataagctatttctataccaaaagatacaataaagctaaatcgtcttcatataagcta 11410385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 44119722 - 44119775
Alignment:
Q  45 cttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttc 98  Q
    |||||||||||| ||||| ||||||||||||| || ||||||||| || |||||    
T  44119722 cttatgtataagttatttttatagtaaaagataaaataaagttaattttttttc 44119775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 32364866 - 32364834
Alignment:
Q  35 atgataagcgcttatgtataagctatttctata 67  Q
    ||||||||| |||||||||||||||||||||||    
T  32364866 atgataagcacttatgtataagctatttctata 32364834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 402683 - 402614
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    |||||||| ||||||||||||||||||||||||| |||||| |||||||| |||| |||||||| ||||||    
T  402683 atgataagggcttatgtataagctatttctatagaaaaaga-taattaaatttaaattgttttcgtataag 402614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 34638107 - 34638034
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagat-taattaaagttaagttgttttcatataagct 107  Q
    ||||||| ||||||| |||||||||||||||||| |||||||  |||||||||||| |||||||| ||||||||    
T  34638107 atgataaccgcttatatataagctatttctatagaaaaagataaaattaaagttaaattgttttcgtataagct 34638034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 30574054 - 30573994
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    |||||||||||||||||||||||||||||||||  ||||||| || |||||||||||| ||||    
T  30574054 atgataagcgcttatgtataagctatttctata--aaaagataaaataaagttaagttttttt 30573994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 905109 - 905040
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagct 107  Q
    ||||||||||| ||||||||||||||||||  ||||||| || |||||| || |||||| ||||||||||    
T  905109 ataagcgcttaagtataagctatttctataacaaaagataaaataaagtcaatttgtttgcatataagct 905040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 2128390 - 2128331
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    ||||||| ||||||||||||||||||||||  ||||||| || ||||||||| |||||||    
T  2128390 ataagcgtttatgtataagctatttctataacaaaagataaaataaagttaaattgtttt 2128331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 32703077 - 32703140
Alignment:
Q  46 ttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||||||||||  |||||||| || |||| | || |||||||||||||||||||    
T  32703077 ttatgtataagctatttctattataaaagataaaataaactcaaattgttttcatataagctat 32703140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 42809242 - 42809301
Alignment:
Q  48 atgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagct 107  Q
    ||||||||||||||||||||  ||||||| || || |||||| |||||||||||||||||    
T  42809242 atgtataagctatttctataacaaaagataaaatatagttaaattgttttcatataagct 42809301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 44061162 - 44061091
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||| ||| |||||||||||||||||||| ||||||| || ||| ||||| |||||||  ||||||||||    
T  44061162 ataagcacttctgtataagctatttctatagcaaaagataaaataaggttaaattgtttttctataagctat 44061091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 1395611 - 1395673
Alignment:
Q  47 tatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||||||||||  ||||||| || |||||| || || ||||||||||||||||    
T  1395611 tatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctat 1395673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 41028990 - 41028916
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctattct 112  Q
    ||||| ||||||||||||||||||||||||  ||||||  || |||||| ||  |||||||| ||||||||||||    
T  41028990 ataagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaatctgttttcaaataagctattct 41028916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 50952262 - 50952334
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||  ||||||||||||||||||  ||| || ||| ||||||||| |||||||||||||||||||    
T  50952262 atgataagcgcttgagtataagctatttctataacaaagga-taaataaagttaa-ttgttttcatataagctat 50952334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 15304472 - 15304420
Alignment:
Q  52 ataagctatttctatagtaaaagattaattaaagttaagttgttttcatataa 104  Q
    ||||||||||||||||  ||||||| || ||||||||| ||||||||||||||    
T  15304472 ataagctatttctataacaaaagataaaataaagttaaattgttttcatataa 15304420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 33405287 - 33405235
Alignment:
Q  57 ctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||| ||||| | || ||||||||| |||||||||||||||||||    
T  33405287 ctatttctatagcaaaaggtaaaataaagttaatttgttttcatataagctat 33405235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 36783477 - 36783401
Alignment:
Q  35 atgataagcgcttatgtataa-gctatttctatagtaaaagattaattaaagttaagttgttttcatataagctatt 110  Q
    |||||||| | |||||||||| ||||||||||||  ||||||| || |||||| || |||||||||||||| |||||    
T  36783477 atgataagtgtttatgtataaagctatttctataccaaaagataaaataaagtaaaattgttttcatataaactatt 36783401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 37689519 - 37689452
Alignment:
Q  41 agcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||| ||||||||||| ||||  ||||||| || ||||||||| || ||||||||||||||||    
T  37689519 agcgcttatg-ataagctatttttataacaaaagataaagtaaagttaaattattttcatataagctat 37689452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 52597626 - 52597686
Alignment:
Q  45 cttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    ||||||||||||||||||| |||||||||||| || | |||| |  |||||||||||||||    
T  52597626 cttatgtataagctatttccatagtaaaagataaagtgaagtaacattgttttcatataag 52597686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 54194447 - 54194479
Alignment:
Q  35 atgataagcgcttatgtataagctatttctata 67  Q
    |||||||||||||||||||||||||||||||||    
T  54194447 atgataagcgcttatgtataagctatttctata 54194479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 52618946 - 52619001
Alignment:
Q  50 gtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    |||||||||||||||| |  ||| |||||| ||||||||| |||||||||||||||    
T  52618946 gtataagctatttctaaaacaaatgattaaataaagttaaattgttttcatataag 52619001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 25447386 - 25447312
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||| |||| ||| ||| ||| |||||||||||||||||||| || |||| |||| |||||||  ||||||||||    
T  25447386 atgagaagcacttttgtgtaaactatttctatagtaaaagataaaataaacttaaattgtttttgtataagctat 25447312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 35127513 - 35127451
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    |||||||| ||||||||||| ||||||||||||  |||||||  | ||||||||| |||||||    
T  35127513 atgataagtgcttatgtataggctatttctataacaaaagatatactaaagttaaattgtttt 35127451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 35394842 - 35394792
Alignment:
Q  36 tgataagcgcttatgtataagctatttctatagtaaaagattaattaaagt 86  Q
    |||||| ||||||||||||| ||||||||||| |||||||| || ||||||    
T  35394842 tgataaacgcttatgtataatctatttctataataaaagataaaataaagt 35394792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 49587042 - 49586984
Alignment:
Q  51 tataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||||||  ||||||| || |||||| ||  ||||||||||||||||||    
T  49587042 tataagctatttctataacaaaagataaaataaagtcaaactgttttcatataagctat 49586984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 2304383 - 2304342
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagat 76  Q
    |||||||| | |||||||||||||||||||||| ||||||||    
T  2304383 atgataagtgattatgtataagctatttctataataaaagat 2304342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 8007828 - 8007763
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||||||| ||||||||  ||||||| || |||||| ||  |||| |||||||||||||    
T  8007828 gcttatgtataagctgtttctataacaaaagataaagtaaagtcaaactgttatcatataagctat 8007763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 10101601 - 10101548
Alignment:
Q  52 ataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    ||||| ||||||||||  ||||||| || ||||||||| |||||||||||||||    
T  10101601 ataagttatttctataacaaaagataaaataaagttaaattgttttcatataag 10101548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 10212526 - 10212473
Alignment:
Q  52 ataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    ||||| ||||||||||  ||||||| || ||||||||| |||||||||||||||    
T  10212526 ataagttatttctataacaaaagataaaataaagttaaattgttttcatataag 10212473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 23815981 - 23816022
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagat 76  Q
    ||||||||| |||||||||||| |||||||||| ||||||||    
T  23815981 atgataagcacttatgtataagttatttctataataaaagat 23816022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 30956751 - 30956706
Alignment:
Q  52 ataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    ||||||||||||||||| ||||||| || ||||||||| |||||||    
T  30956751 ataagctatttctatagcaaaagataaaataaagttaaattgtttt 30956706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 30972563 - 30972518
Alignment:
Q  52 ataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    ||||||||||||||||| ||||||| || ||||||||| |||||||    
T  30972563 ataagctatttctatagcaaaagataaaataaagttaaattgtttt 30972518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 35328308 - 35328236
Alignment:
Q  32 attatgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    |||||||||||| |||||||| || ||||| |||||| ||| || ||| ||||||||| |||||||| ||||||    
T  35328308 attatgataagcacttatgtacaacctattactatagcaaagga-taaataaagttaaattgttttcgtataag 35328236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 20669107 - 20669139
Alignment:
Q  35 atgataagcgcttatgtataagctatttctata 67  Q
    ||||||||| |||||||||||||||||||||||    
T  20669107 atgataagcacttatgtataagctatttctata 20669139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 30956751 - 30956711
Alignment:
Q  101 ataagctatt-ctatagtaaaagataaaataaagttaaatt 140  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  30956751 ataagctatttctatagcaaaagataaaataaagttaaatt 30956711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 30972563 - 30972523
Alignment:
Q  101 ataagctatt-ctatagtaaaagataaaataaagttaaatt 140  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  30972563 ataagctatttctatagcaaaagataaaataaagttaaatt 30972523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 36631175 - 36631131
Alignment:
Q  53 taagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    |||||||||||||||||||| ||| || ||||||||| |||||||    
T  36631175 taagctatttctatagtaaaggataaagtaaagttaaattgtttt 36631131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 51630036 - 51630113
Alignment:
Q  32 attatgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||| ||| |||  ||||||||| ||||| ||||||| || ||||||||| ||||||| |||||||||||    
T  51630036 attatgataagcacttgtgttcaagctatttatatagcaaaagataaaataaagttaaattgttttgatataagctat 51630113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 7601689 - 7601749
Alignment:
Q  37 gataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    ||||||||||||||||||||||||| |||||| ||| ||| || ||||||||| |||||||    
T  7601689 gataagcgcttatgtataagctattcctatagcaaaggataaaataaagttaaattgtttt 7601749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 25487678 - 25487610
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctattct 112  Q
    ||||||||||||||||||||||||  |||| || || |||||| | ||| |||||||||||||||||||    
T  25487678 gcttatgtataagctatttctataacaaaaaataaaataaagtcacgtttttttcatataagctattct 25487610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 49004112 - 49004040
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||  | |||||| |||||||| ||| ||||||    
T  49004112 atgataagcgcttatgtataagcaatttctatagcaaaagataaa--atagttaaattgttttcgtattagctat 49004040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 3155543 - 3155593
Alignment:
Q  47 tatgtataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    |||||||||||||||||||||| ||||||| || ||||||||| |||||||    
T  3155543 tatgtataagctatttctatagcaaaagataaaataaagttaaattgtttt 3155593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 26520371 - 26520297
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||| ||||||||||| || ||||||||  ||||||| || ||||||||| |||||||| | ||||||||    
T  26520371 atgataagcacttatgtataaactgtttctataacaaaagatgaaataaagttaaattgttttcgtgtaagctat 26520297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 30338725 - 30338660
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||| |||||||||||  |||||||  | |||||||||  ||||||||||||||||||    
T  30338725 gcttatgtataaactatttctataacaaaagatagaataaagttaaactgttttcatataagctat 30338660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 40174503 - 40174565
Alignment:
Q  45 cttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||||||||||  |||| |||| || |||||||||||| ||||||||||| |||||||    
T  40174503 cttatgtataagctattt--atagcaaaaaataaattaaagttaaattgttttcataaaagctat 40174565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 6364079 - 6364151
Alignment:
Q  37 gataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||| |||||||||||||||||||||||  ||||||| || |||||| || || | |||| |||||||||    
T  6364079 gataagcacttatgtataagctatttctataacaaaagataaaataaagtgaaattctgttcacataagctat 6364151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 7731712 - 7731764
Alignment:
Q  49 tgtataagctatttctatagtaaaagattaattaaagttaagttgttttcata 101  Q
    ||||||||||||||||||| ||||||| ||| |||||||||  ||||||||||    
T  7731712 tgtataagctatttctataataaaagactaaataaagttaaactgttttcata 7731764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 17751264 - 17751224
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaaga 75  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  17751264 atgataagcgcttatttataagctatttctataataaaaga 17751224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 30024638 - 30024702
Alignment:
Q  45 cttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||| ||||| ||||||||||  ||||||| || |||||| || |||||||||||||||||||    
T  30024638 cttatgcataagttatttctataacaaaagataaaataaagtaaaattgttttcatataagctat 30024702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 9680601 - 9680660
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatata 103  Q
    |||||||||||||||||||| ||| |||||||| || |||||| || ||||| |||||||    
T  9680601 gcttatgtataagctatttcgataataaaagataaaataaagtcaaattgttctcatata 9680660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 18630611 - 18630682
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||||| |||| ||||||| |||  ||||||| || |||||| || | |||||||||||||||||    
T  18630611 ataagcgcttatgcataaactatttcaataacaaaagataaaataaagtcaattggttttcatataagctat 18630682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 44119293 - 44119230
Alignment:
Q  46 ttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||| ||||||||||| ||||||| ||  ||||| ||  ||||||||||||||||||    
T  44119293 ttatgtataagttatttctatagcaaaagataaaacaaagtcaatatgttttcatataagctat 44119230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 437566 - 437504
Alignment:
Q  44 gcttatgtataagcta-tttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    |||||||||||||||| ||| ||||| ||||||| || ||||||||| |||| ||||||||||    
T  437566 gcttatgtataagctattttttatagcaaaagataaaataaagttaaattgtgttcatataag 437504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 8422970 - 8422907
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||||||||||| ||||  ||||||| || |||||| |  |||||||||||||||||||    
T  8422970 gcttatgtataagctatttttataaaaaaagataaaataaagtca--ttgttttcatataagctat 8422907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 11389454 - 11389528
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||| ||||||||||||  ||||||||||  ||||||| || |||||||||  |||||| |||||| ||||    
T  11389454 atgataagtgcttatgtataaattatttctataaaaaaagataaagtaaagttaaactgttttaatataaactat 11389528  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 49803151 - 49803209
Alignment:
Q  47 tatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    |||||||||| ||||||||||| ||||||| || | ||||||| ||||||||| |||||    
T  49803151 tatgtataagttatttctatagcaaaagataaaatgaagttaaattgttttcacataag 49803209  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 3155547 - 3155588
Alignment:
Q  100 tataagctatt-ctatagtaaaagataaaataaagttaaatt 140  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  3155547 tataagctatttctatagcaaaagataaaataaagttaaatt 3155588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 26883924 - 26883997
Alignment:
Q  36 tgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||| | ||||||||||| ||||||| ||  || |||| || | ||||||| |||||||||||||||||||    
T  26883924 tgataagtgattatgtataagttatttctctaagaagagataaaatgaagttaaattgttttcatataagctat 26883997  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 40532988 - 40532955
Alignment:
Q  109 ttctatagtaaaagataaaataaagttaaattat 142  Q
    ||||| ||||||||||||||||||||||||||||    
T  40532988 ttctaaagtaaaagataaaataaagttaaattat 40532955  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 54392950 - 54392886
Alignment:
Q  45 cttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctatt 110  Q
    ||||||||||||||||||||||| ||||| | ||| ||||||||| |||||||  |||| ||||||    
T  54392950 cttatgtataagctatttctataataaaa-aataaataaagttaaattgtttttgtatatgctatt 54392886  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 7368194 - 7368126
Alignment:
Q  39 taagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagct 107  Q
    |||||||||||| |||| ||||||||||  |||||  | || |||||| || |||||||||||||||||    
T  7368194 taagcgcttatgaataaactatttctatgataaaaagtaaaataaagtcaaattgttttcatataagct 7368126  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 11802479 - 11802519
Alignment:
Q  100 tataagctattctatagtaaaagataaaataaagttaaatt 140  Q
    ||||||||||||||||  ||||||||||||||||| |||||    
T  11802479 tataagctattctataacaaaagataaaataaagtcaaatt 11802519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 21193937 - 21193977
Alignment:
Q  46 ttatgtataagctatttctatagtaaaagattaattaaagt 86  Q
    ||||||||||||||||| ||||||||||||| || ||||||    
T  21193937 ttatgtataagctatttttatagtaaaagataaaataaagt 21193977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 22684649 - 22684581
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctattct 112  Q
    |||| |||||||||||||||||||  ||| | | || |||||| || ||||||||||||||||| ||||    
T  22684649 gcttctgtataagctatttctataacaaacggtaaaataaagtcaaattgttttcatataagctgttct 22684581  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 23459578 - 23459630
Alignment:
Q  57 ctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||| ||||| ||||||| || | |||||||||||||||| ||||||||||    
T  23459578 ctatttttatagcaaaagataaaatgaagttaagttgttttcttataagctat 23459630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 27043966 - 27043898
Alignment:
Q  41 agcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||||||||||||| || || ||||  ||| ||| || ||||||||| |||||||| ||||||||||    
T  27043966 agcgcttatgtataaggtacttatataacaaaggataaaataaagttaaattgttttcgtataagctat 27043898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 44008004 - 44007940
Alignment:
Q  45 cttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||| ||||||||||| |||||  ||||||| || |||||  || |||||||||||||||||||    
T  44008004 cttatatataagctattactataccaaaagataaaataaagacaaattgttttcatataagctat 44007940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 53137967 - 53137999
Alignment:
Q  35 atgataagcgcttatgtataagctatttctata 67  Q
    |||||||||||||||||||||| ||||||||||    
T  53137967 atgataagcgcttatgtataagttatttctata 53137999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 27121718 - 27121656
Alignment:
Q  45 cttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagct 107  Q
    |||||||||||| |||||||||| |||| ||| || |||||| || |||||||||||||||||    
T  27121718 cttatgtataagatatttctataataaatgataaaataaagtcaaattgttttcatataagct 27121656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 35536044 - 35536105
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataag 105  Q
    ||||||||||||||||||||||||  | ||||| || |||||| || |||||||||||||||    
T  35536044 gcttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 40689107 - 40689054
Alignment:
Q  56 gctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||||| ||||||| || ||||||||| || ||||||||||||||||    
T  40689107 gctatttctatagcaaaagataaaataaagttaaattattttcatataagctat 40689054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 45813313 - 45813248
Alignment:
Q  44 gcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    |||||| |||||||||||||||||  ||||||| || |||||| || |||||||||||||| ||||    
T  45813313 gcttatttataagctatttctataccaaaagataaaataaagtcaacttgttttcatataatctat 45813248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 33552963 - 33552931
Alignment:
Q  35 atgataagcgcttatgtataagctatttctata 67  Q
    |||||||||||||||||||||||||||||||||    
T  33552963 atgataagcgcttatgtataagctatttctata 33552931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 33673003 - 33673039
Alignment:
Q  32 attatgataagcgcttatgtataagctatttctatag 68  Q
    |||||||||||||||||||||||||||| ||||||||    
T  33673003 attatgataagcgcttatgtataagctacttctatag 33673039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 48157251 - 48157188
Alignment:
Q  46 ttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||||  |||||||||| |||||||| || |||||| || ||||||| |||||||||||    
T  48157251 ttatgtataacttatttctataataaaagataaaataaagtgaaattgttttaatataagctat 48157188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 2012745 - 2012683
Alignment:
Q  46 ttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagcta 108  Q
    |||||||||||||||||||||   |||| ||||| ||| || || ||||||||||||||||||    
T  2012745 ttatgtataagctatttctatgccaaaatattaaataatgtcaaattgttttcatataagcta 2012683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 2030648 - 2030710
Alignment:
Q  46 ttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagcta 108  Q
    |||||||||||||||||||||   |||| ||||| ||| || || ||||||||||||||||||    
T  2030648 ttatgtataagctatttctatgccaaaatattaaataatgtcaaattgttttcatataagcta 2030710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 22759117 - 22759187
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagcta 108  Q
    ||||||| |||||| |||||||||| ||||  ||||||| || |||||  || ||||||||||||||||||    
T  22759117 ataagcgtttatgtttaagctatttgtataacaaaagataaaataaaggaaaattgttttcatataagcta 22759187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 47177564 - 47177638
Alignment:
Q  35 atgataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagctat 109  Q
    ||||||||| ||| |||||||| ||||||||||  |||| |  ||  |||||||| |||||||||||||||||||    
T  47177564 atgataagcccttctgtataaggtatttctatatcaaaatacaaaacaaagttaaattgttttcatataagctat 47177638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 35266843 - 35266896
Alignment:
Q  51 tataagctatttctatagtaaaagattaattaaagttaagttgttttcatataa 104  Q
    |||||||||||||||||  ||| |||||| ||||||||| || |||||||||||    
T  35266843 tataagctatttctataacaaatgattaaataaagttaaatttttttcatataa 35266896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 40689102 - 40689069
Alignment:
Q  109 ttctatagtaaaagataaaataaagttaaattat 142  Q
    |||||||| |||||||||||||||||||||||||    
T  40689102 ttctatagcaaaagataaaataaagttaaattat 40689069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 43153030 - 43152969
Alignment:
Q  49 tgtataagctatttctatagtaaaagattaattaaagttaagttg-ttttcatataagctat 109  Q
    |||||||||||||||||||  ||||||| || ||||||||| ||| |||||||| |||||||    
T  43153030 tgtataagctatttctataacaaaagataaaataaagttaaattgtttttcatacaagctat 43152969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 1417203 - 1417263
Alignment:
Q  46 ttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagc 106  Q
    |||||||||| |||||| ||||  ||||||| || |||||| || ||||||||||||||||    
T  1417203 ttatgtataaactatttatataacaaaagataaaataaagtcaaattgttttcatataagc 1417263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 8960767 - 8960707
Alignment:
Q  37 gataagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgtttt 97  Q
    |||||| ||||||||||| |||||| |||||| ||| ||| || ||||||||| |||||||    
T  8960767 gataagggcttatgtatatgctattcctatagcaaatgataaaataaagttaaattgtttt 8960707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 19214536 - 19214492
Alignment:
Q  32 attatgataagcgcttatgtataagctatttctatagtaaaagat 76  Q
    |||||||||||  |||||||||||||||||| ||||| |||||||    
T  19214536 attatgataagaacttatgtataagctatttttatagcaaaagat 19214492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 33894555 - 33894622
Alignment:
Q  39 taagcgcttatgtataagctatttctatagtaaaagattaattaaagttaagttgttttcatataagct 107  Q
    |||| ||||||||||||||||||||||||  ||||||| || | |||| ||  ||||||||||||||||    
T  33894555 taagtgcttatgtataagctatttctataacaaaagataaaat-aagtcaaactgttttcatataagct 33894622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 1213 - 1165
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagt 86  Q
    ||||| ||||||||||||||||||||||||  ||||||| || ||||||    
T  1213 ataagtgcttatgtataagctatttctataacaaaagataaaataaagt 1165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 2762 - 2810
Alignment:
Q  38 ataagcgcttatgtataagctatttctatagtaaaagattaattaaagt 86  Q
    ||||| ||||||||||||||||||||||||  ||||||| || ||||||    
T  2762 ataagtgcttatgtataagctatttctataacaaaagataaaataaagt 2810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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