View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_32 (Length: 497)
Name: NF0856_low_32
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_32 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 204 - 497
Target Start/End: Original strand, 38613244 - 38613537
Alignment:
| Q |
204 |
tcgtttagttaatgctggtgcaaaattgcaaataaatcaataaactaattaatctgtttgcagttgacgttaagcatgagttaatcaattcgggcaactt |
303 |
Q |
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| T |
38613244 |
tcgtttagttaatgctggtgcaaaattgcaaataaatcaataaactaattaatctgtttgcagttgacattaagcatgagttaatcaattcgggcaactt |
38613343 |
T |
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| Q |
304 |
aagagcaaaaaacataagtagagtttggatttattattttgtatgttcacaacagtatggaaattgagctttatgaagcttcagtcaaaatgtatgattc |
403 |
Q |
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| T |
38613344 |
aagagcaaaaaacataagtagagtttggatttattattttgtatgttcacaacagtatgaaaattgagctttatgaagcttcagtcaaaatgtataattc |
38613443 |
T |
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| Q |
404 |
ttgataaggaattttaaggagaaaatggtccagagtgtgtggacatgatagaagatgctttgtcttgcatatgaaacgtaaaggtaggttcgtc |
497 |
Q |
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| T |
38613444 |
ttgataaggaattttaaggagaaaatggtccagagtgtgtggacatgatagaagatgcttcgtcttgcatatgaaacgtaaaggtaggttcgtc |
38613537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 38613019 - 38613244
Alignment:
| Q |
10 |
tcataggttagcacatgtgggtaattaaattggagtcggcttatcgataatctttaatttaatccataaaccctacatctataccgtggcttggtgaagt |
109 |
Q |
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| T |
38613019 |
tcataggttagcacatgtgggtaattaaattggagtcggcttatcgataatctttaatttaatccataaaccctacatctataccgtggcttggtgaagt |
38613118 |
T |
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| Q |
110 |
tttaagtttttgtaactctcatgtaattcttgtggtttcatgtctgtgcccaattcatgccttatgtgaatccatcaacaagcataatggtttttcgttt |
209 |
Q |
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| T |
38613119 |
tt-aagtttttgtaactctcatgtaattcttgtggtttcatgtctgtgcccaattcatgccttatgtgaatccatcaacaagcataatggtttttcgttt |
38613217 |
T |
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| Q |
210 |
agttaatgctggtgcaaaattgcaaat |
236 |
Q |
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| T |
38613218 |
agttaatgctggtgcaaaattgcaaat |
38613244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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