View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_35 (Length: 488)
Name: NF0856_low_35
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 29 - 289
Target Start/End: Complemental strand, 53834045 - 53833783
Alignment:
| Q |
29 |
aggtttgtccaaatctcatttccagctacatcaaatctgacattaatgtcaaaatttatcaggtatgctggatagatattttctcttttacgactacacg |
128 |
Q |
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| T |
53834045 |
aggtttgtccaaatcttatttccagctacatcaaatctgacattaatgtcaaaatttatcaggtatgctggatagatattttctcttttacgactacacg |
53833946 |
T |
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| Q |
129 |
tgtttttattttcaattaggtgcagacatgatctttacaccttttcataataaattatacgttgcggttttattacatttcatttggatatgcttcttta |
228 |
Q |
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| T |
53833945 |
tgtttttattttcaattaggtgcagacatgatctttacaccttttcataataaattatacgttgcggttatattacatttcatttggatatgcttcttta |
53833846 |
T |
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| Q |
229 |
gtaatgtc--aaagaagcaatctatttatcttttacaaagtagcaccaatctattattcattc |
289 |
Q |
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| T |
53833845 |
gtaatgtcaaaaagaagcaatctatttatcttttacaaagtagcaccaatctattattcattc |
53833783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 337 - 477
Target Start/End: Complemental strand, 53833734 - 53833594
Alignment:
| Q |
337 |
caactaatatagtgttggaagagttgatattacttctcttatagaataacccgagtttgatttcagaagtcgttcattttaaagagaaaaagtgatttct |
436 |
Q |
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|||||||| |||||| |||||||||||||| ||||||||||||||||||||| |||| |||||| ||||||||||||| |||||||||||| ||||||| |
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| T |
53833734 |
caactaatttagtgtcggaagagttgatatcacttctcttatagaataacccaagttgaatttcaaaagtcgttcatttgaaagagaaaaagagatttct |
53833635 |
T |
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| Q |
437 |
tttctccgattcgaagattagtttcataacaaatcacctat |
477 |
Q |
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| T |
53833634 |
tttctgcgattcgaagattaatttcataacaaatcacctat |
53833594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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