View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_36 (Length: 483)

Name: NF0856_low_36
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_36
NF0856_low_36
[»] chr2 (2 HSPs)
chr2 (96-437)||(38252483-38252824)
chr2 (96-437)||(43156718-43157059)
[»] chr1 (8 HSPs)
chr1 (96-437)||(11474042-11474383)
chr1 (138-437)||(28245668-28245967)
chr1 (234-437)||(50019157-50019363)
chr1 (96-219)||(50019454-50019577)
chr1 (272-329)||(10465011-10465068)
chr1 (272-329)||(43734663-43734720)
chr1 (272-313)||(50673558-50673599)
chr1 (96-128)||(28245962-28245994)
[»] chr6 (2 HSPs)
chr6 (96-437)||(19307345-19307686)
chr6 (254-437)||(10123895-10124078)
[»] chr5 (1 HSPs)
chr5 (96-437)||(25382155-25382497)
[»] chr4 (2 HSPs)
chr4 (272-437)||(48794161-48794326)
chr4 (219-275)||(48794087-48794140)
[»] chr8 (1 HSPs)
chr8 (272-329)||(25862743-25862800)
[»] chr3 (2 HSPs)
chr3 (433-468)||(33990708-33990743)
chr3 (277-316)||(5911504-5911543)
[»] chr7 (1 HSPs)
chr7 (277-329)||(27979093-27979145)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 96 - 437
Target Start/End: Complemental strand, 38252824 - 38252483
Alignment:
Q  96 aaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38252824 aaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttg 38252725  T
Q  196 ttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttctgc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38252724 ttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttctgc 38252625  T
Q  296 gcctacaacttatgagcccccacaagcacatgagtctcaagtcaactacacaaccatgctaatggtaatttcaaaaacaaattcataatgaactattcat 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38252624 gcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatgctaatggtaatttcaaaaacaaattcataatgaactattcat 38252525  T
Q  396 acattcaacaagtatcgtgatgctaatttttaagttgttatt 437  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38252524 acattcaacaagtatcgtgatgctaatttttaagttgttatt 38252483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 96 - 437
Target Start/End: Original strand, 43156718 - 43157059
Alignment:
Q  96 aaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43156718 aaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttg 43156817  T
Q  196 ttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttctgc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43156818 ttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttctgc 43156917  T
Q  296 gcctacaacttatgagcccccacaagcacatgagtctcaagtcaactacacaaccatgctaatggtaatttcaaaaacaaattcataatgaactattcat 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43156918 gcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatgctaatggtaatttcaaaaacaaattcataatgaactattcat 43157017  T
Q  396 acattcaacaagtatcgtgatgctaatttttaagttgttatt 437  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43157018 acattcaacaagtatcgtgatgctaatttttaagttgttatt 43157059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 96 - 437
Target Start/End: Original strand, 11474042 - 11474383
Alignment:
Q  96 aaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11474042 aaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttg 11474141  T
Q  196 ttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttctgc 295  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11474142 ttttaattttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttctgc 11474241  T
Q  296 gcctacaacttatgagcccccacaagcacatgagtctcaagtcaactacacaaccatgctaatggtaatttcaaaaacaaattcataatgaactattcat 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  11474242 gcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatgctaatggtaatttcaaaaacaaattcataaagaactattcat 11474341  T
Q  396 acattcaacaagtatcgtgatgctaatttttaagttgttatt 437  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11474342 acattcaacaagtatcgtgatgctaatttttaagttgttatt 11474383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 138 - 437
Target Start/End: Complemental strand, 28245967 - 28245668
Alignment:
Q  138 cgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28245967 cgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatg 28245868  T
Q  238 tatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagt 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28245867 tatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttttgcgcctacaacttatgagcccccacaagcacatgagtctcaagt 28245768  T
Q  338 caactacacaaccatgctaatggtaatttcaaaaacaaattcataatgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttatt 437  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28245767 caattacacaaccatgctaatggtaatttcaaaaacaaattcataatgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttatt 28245668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 234 - 437
Target Start/End: Complemental strand, 50019363 - 50019157
Alignment:
Q  234 catgtatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttctgcg---cctacaacttatgagcccccacaagcacatgagt 330  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||     
T  50019363 catgtatcttagcttaataattttacataatcattttagtttgatggagtatcttgttctgcgtcgcctccaacttatgagcccccacaagcacatgagg 50019264  T
Q  331 ctcaagtcaactacacaaccatgctaatggtaatttcaaaaacaaattcataatgaactattcatacattcaacaagtatcgtgatgctaatttttaagt 430  Q
     ||||||||| ||||    |||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||    
T  50019263 atcaagtcaattacattgtcatgctaatggtaatttcaaaagcaaattcataaggaactattcatacatttaacaagtatcgtgattctaatttttaagt 50019164  T
Q  431 tgttatt 437  Q
    |||||||    
T  50019163 tgttatt 50019157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 96 - 219
Target Start/End: Complemental strand, 50019577 - 50019454
Alignment:
Q  96 aaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttg 195  Q
    ||||||| ||||||||| ||||| |||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||    
T  50019577 aaaagttttctggaaaaccagcaaagtcgcgctacatctagttgcgctccacgtaaagaaaaaagttcacaggtatatgagttggtatttagagtacttg 50019478  T
Q  196 ttttagttttacttgttttggtga 219  Q
    ||||| ||||||||||||||||||    
T  50019477 ttttaattttacttgttttggtga 50019454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 10465068 - 10465011
Alignment:
Q  272 ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgag 329  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| | ||||| ||||    
T  10465068 ggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgag 10465011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 43734720 - 43734663
Alignment:
Q  272 ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgag 329  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| | ||||| ||||    
T  43734720 ggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgag 43734663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 50673599 - 50673558
Alignment:
Q  272 ggttgatggagtatcttgttctgcgcctacaacttatgagcc 313  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  50673599 ggttgatggagtatcttgttccgcgcctccaacttatgagcc 50673558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 28245994 - 28245962
Alignment:
Q  96 aaaagttgtctggaaaaacagcatagtcgcgct 128  Q
    |||||||||||||||||||||||||||||||||    
T  28245994 aaaagttgtctggaaaaacagcatagtcgcgct 28245962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 96 - 437
Target Start/End: Complemental strand, 19307686 - 19307345
Alignment:
Q  96 aaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttg 195  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19307686 aaaagttgtttggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttg 19307587  T
Q  196 ttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttctgc 295  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19307586 ttttatttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttttgc 19307487  T
Q  296 gcctacaacttatgagcccccacaagcacatgagtctcaagtcaactacacaaccatgctaatggtaatttcaaaaacaaattcataatgaactattcat 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19307486 gcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatgctaatggtaatttcaaaaacaaattcataatgaactattcat 19307387  T
Q  396 acattcaacaagtatcgtgatgctaatttttaagttgttatt 437  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19307386 acattcaacaagtatcgtgatgctaatttttaagttgttatt 19307345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 254 - 437
Target Start/End: Complemental strand, 10124078 - 10123895
Alignment:
Q  254 tttgacataatcattttaggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaactacacaaccatg 353  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  10124078 tttgacataatcattttaggttgatggagtatcttgttatgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatg 10123979  T
Q  354 ctaatggtaatttcaaaaacaaattcataatgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttatt 437  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10123978 ctaatggtaatttcaaaaacaaattcatattgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttatt 10123895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 96 - 437
Target Start/End: Original strand, 25382155 - 25382497
Alignment:
Q  96 aaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttg 195  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25382155 aaaagttgtctggaaaaacagcatagtcgcgctacatctagccgcgctccacctaaagaaaaaagttcacaggtatatgagttggtatttaaagtacttg 25382254  T
Q  196 ttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttctgc 295  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25382255 ttttaattttacttgttttggtgactgccataattttacatgtatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttctgc 25382354  T
Q  296 gcctacaacttatga-gcccccacaagcacatgagtctcaagtcaactacacaaccatgctaatggtaatttcaaaaacaaattcataatgaactattca 394  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  25382355 gcctacaacttatgatccccccacaagcacataagtctcaagtcaattacacagccatgctaatggtaatttcaaaaacaaattcataaggaactattca 25382454  T
Q  395 tacattcaacaagtatcgtgatgctaatttttaagttgttatt 437  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25382455 tacattcaacaagtatcgtgatgctaatttttaagttgttatt 25382497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 272 - 437
Target Start/End: Original strand, 48794161 - 48794326
Alignment:
Q  272 ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaactacacaaccatgctaatggtaatttcaaaa 371  Q
    |||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||  |||| |||| |||||| ||||||| |||||||||||||||    
T  48794161 ggttgatggagtatcttgttctgcacctccaacttatgcgcccccacaagcacatgaggatcaattcaattacacagccatgctgatggtaatttcaaaa 48794260  T
Q  372 acaaattcataatgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttatt 437  Q
    |||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||||||    
T  48794261 acaaattcataaggaactatacatacatttaacatgtatcgtgatgctaatttttaagttgttatt 48794326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 48794087 - 48794140
Alignment:
Q  219 actgccataattttacatgtatcttagcttaataatttgacataatcattttaggtt 275  Q
    |||||||| |||||||||||||||||| |   |||||| ||||||||||||||||||    
T  48794087 actgccatgattttacatgtatcttagtt---taattttacataatcattttaggtt 48794140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 25862743 - 25862800
Alignment:
Q  272 ggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgag 329  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| | ||||| ||||    
T  25862743 ggttgatggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgag 25862800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 433 - 468
Target Start/End: Complemental strand, 33990743 - 33990708
Alignment:
Q  433 ttattggcgtctatgtgttagtgtcgtgtccagtgt 468  Q
    ||||||||||||||||||||||||||||||||||||    
T  33990743 ttattggcgtctatgtgttagtgtcgtgtccagtgt 33990708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 5911504 - 5911543
Alignment:
Q  277 atggagtatcttgttctgcgcctacaacttatgagccccc 316  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  5911504 atggagtatcttgttccgcgcctccaacttatgagccccc 5911543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 27979093 - 27979145
Alignment:
Q  277 atggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgag 329  Q
    |||||||||||||||| |||||| |||||||||||||||| | ||||| ||||    
T  27979093 atggagtatcttgttccgcgcctccaacttatgagcccccgctagcacgtgag 27979145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3337 times since January 2019
Visitors: 6172