View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_39 (Length: 480)
Name: NF0856_low_39
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 55 - 452
Target Start/End: Original strand, 4140972 - 4141369
Alignment:
| Q |
55 |
atagttgtaaattatggatgtccaaatataagcgctctttagtttatttataagaaatagttgtaaattatggatgtccaatgaaagtttacatatttat |
154 |
Q |
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| T |
4140972 |
atagttgtaaattatggatgtccaaatataagtgctctttagtttatttataagaaatagttgtaaattatggatgtccaatgaaagtttacatatttat |
4141071 |
T |
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| Q |
155 |
ttctttaacaaaccnnnnnnncaatacacaagaaaataacataaattatttccagcaaacagcacacaaattatttcctgcatacaacacatacaaatta |
254 |
Q |
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| T |
4141072 |
ttctttaacaaaccaaaaaaacaatacacaagaaaataacataaattatttccagcaaacagcacacaaattatttcctgcatacaacacatacaaatta |
4141171 |
T |
|
| Q |
255 |
tcttaaataaatgttgtaagattttccagattctttttagccataatatgtttgttcattctcaaactctgcttgattcatgctccaagcatttagttct |
354 |
Q |
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| T |
4141172 |
tcttaaataaatgttgtaagattttccagattctttttagccataatatgtttgttcattctcaaactctgcttgattcatgctccaagcatttagttct |
4141271 |
T |
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| Q |
355 |
gagataaccacactctgacttccatcattgaatacaaaaagatgtgcatcttgctctatagccaataagggataaactctacttgttatcacaacttt |
452 |
Q |
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| T |
4141272 |
gagataaccacactctgacttccatcattgaatacaaaaagatgtgcatctttctctatagccaataagggataaactctacttgttatcacaacttt |
4141369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 259 - 443
Target Start/End: Original strand, 4136120 - 4136302
Alignment:
| Q |
259 |
aaataaatgttgtaagattttccagattctttttagccataatatgtttgttcattctcaaactctgcttgattcatgctccaagcatttagttctgaga |
358 |
Q |
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| T |
4136120 |
aaataaatgttgtaagattttccaaattatttttagctatattatgctt--tctgtgccaaactgtgcttgcttcatgctccaagcattcagttgtgaga |
4136217 |
T |
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| Q |
359 |
taaccacactctgacttccatcattgaatacaaaaagatgtgcatcttgctctatagccaataagggataaactctacttgttat |
443 |
Q |
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| T |
4136218 |
taaccacactttggcttccatcattgaatacaaaaagatgtgcatctttatctgtagcaaataagggataagctctacttgttat |
4136302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 321 - 452
Target Start/End: Original strand, 4116292 - 4116423
Alignment:
| Q |
321 |
ctctgcttgattcatgctccaagcatttagttctgagataaccacactctgacttccatcattgaatacaaaaagatgtgcatcttgctctatagccaat |
420 |
Q |
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| T |
4116292 |
ctctgcctgcttcatgctccaagcattcagttttgagataaccacactctgacttccattgttgaatacataaagatgtgcatctttttctatagccaat |
4116391 |
T |
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| Q |
421 |
aagggataaactctacttgttatcacaacttt |
452 |
Q |
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| T |
4116392 |
aagggataaactctacttgttatcacagcttt |
4116423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 226 - 443
Target Start/End: Original strand, 4127162 - 4127377
Alignment:
| Q |
226 |
tatttcctgcatacaacacatacaaattatcttaaataaatgttgtaagattttccagattctttttagccataatatgtttgttcattctcaaactctg |
325 |
Q |
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| T |
4127162 |
tatttcatgcatacaacccaaataaattatcttaaataaatgctgtataattttccaaattctattcagctatatactgttt-tccactct-aaactctg |
4127259 |
T |
|
| Q |
326 |
cttgattcatgctccaagcatttagttctgagataaccacactctgacttccatcattgaatacaaaaagatgtgcatcttgctctatagccaataaggg |
425 |
Q |
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|||| |||||||||||||||||||||| ||| ||| ||||||| || ||||||| ||||||||| |||||||||||| || |||||||||||||||||| |
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| T |
4127260 |
cttgcttcatgctccaagcatttagttgtgaaatagccacactttggcttccattgttgaatacataaagatgtgcatatttctctatagccaataaggg |
4127359 |
T |
|
| Q |
426 |
ataaactctacttgttat |
443 |
Q |
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| T |
4127360 |
ataaactctatttgttat |
4127377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 4140974 - 4141052
Alignment:
| Q |
1 |
agttgtaaattatggatgtccaaatataagcgctctttagtttatttataagaaatagttgtaaattatggatgtccaa |
79 |
Q |
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| T |
4140974 |
agttgtaaattatggatgtccaaatataagtgctctttagtttatttataagaaatagttgtaaattatggatgtccaa |
4141052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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