View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_4 (Length: 815)
Name: NF0856_low_4
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 667; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 1 - 786
Target Start/End: Original strand, 51350159 - 51350968
Alignment:
| Q |
1 |
aatatcacagtgacattgattttattagagctgcaaagtatagtttctgtcaaattcacagaagcacaccgcgattctatcaaactcacc-taaatgcga |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
51350159 |
aatatcacagtgacattgattttattagagctgcaaagtatagtttctgtcaaattcacagaagcacaccgcgattctatcaaattcaccataaatgcga |
51350258 |
T |
|
| Q |
100 |
atgtgcactcatgatgatgatggtgaatatattactgcaattgtcaatttagcacagtagaatcttgatgcttgtagtaaaaacaaaattaataagatat |
199 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350259 |
atgtgcactcatagtgat---ggtgaatatattactgcaattgtcaatttagcacagtagaatcttgatgcttgtagtaaaaacaaaattaataagatat |
51350355 |
T |
|
| Q |
200 |
ctctgcattaattgatatctaccacttgtgataatctatactggtatgctaataatgtagtactggtattattgaatataaaatagaaataactacattt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350356 |
ctctgcattaattgatatctaccacttgtgataatctatactggtatgctaataatgtagtactggtattattgaatataaaatagaaataactacattt |
51350455 |
T |
|
| Q |
300 |
actccaacctgaatttaaaattgaaattggagagacttatgactctatttcaccctccaattcttgaccgtgacaaccagcaccttcaagaacaattaca |
399 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51350456 |
actccaacctgaatttaaaattgaaattgaagagacttatgactctatttcaccctccaattcttgactgtgacaaccagcaccttcaagaacaattaca |
51350555 |
T |
|
| Q |
400 |
aaataataagtatatg----------------------attgtcaaaatactaaaactctcacacgttcgaaaacgataattatttgagaaaattgaatg |
477 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350556 |
aaataataagtatatgaagcactgacagagatacggacattgtcacaatactaaaactctcacacgttcgaaaacgataattatttgagaaaattgaatg |
51350655 |
T |
|
| Q |
478 |
taagtatgtgtcatgtcggtgttcaacacacctgacacacattcaacttgaatagctatatataaaacatatggaggcgaatgaagaaacggtccctgta |
577 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51350656 |
taagtatgtgtcatgtcggtgttcaacacatctgacacacattcaacttgaatagctatatataaaacatatggaggcgaatgaagaaacggtccctgta |
51350755 |
T |
|
| Q |
578 |
aaatacccaacaatggactccctcctggattcggggtacaatagaatctctttccagaaacaatgcaaattagtgcagcagaagcatataagagagatat |
677 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350756 |
aaatacccaacaatggactccctcctggattcggggtacaatagaatctctttccagaaacaatgcaaattagtgcagcagaagcatataagagagatat |
51350855 |
T |
|
| Q |
678 |
aagaaaacctttgtaccatttgaattgtgatctaacatgaactacaaaggtggcacctaagctaacagaaacc----aatcaaagaagctagctagttgg |
773 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
51350856 |
aagaaaacctttgtaccatttgaattgtgatctaacatgaactacaaaggtggcacctaagctaacaaaaaccaattaatcaaagaagctagctagttgg |
51350955 |
T |
|
| Q |
774 |
agacgatcctttg |
786 |
Q |
| |
|
||||| ||||||| |
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|
| T |
51350956 |
agacggtcctttg |
51350968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 572 - 741
Target Start/End: Original strand, 51360104 - 51360273
Alignment:
| Q |
572 |
cctgtaaaatacccaacaatggactccctcctggattcggggtacaatagaatctctttccagaaacaatgcaaattagtgcagcagaagcatataagag |
671 |
Q |
| |
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|||||||||||| ||||||||||||| | || ||| | | ||| ||||||||||||||||| |||||||||||| ||||||| | || | || |||| |
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| T |
51360104 |
cctgtaaaatactcaacaatggactctccccaggaattcgtttacgatagaatctctttccagcaacaatgcaaataagtgcagaggcagaacatgagag |
51360203 |
T |
|
| Q |
672 |
agatataagaaaacctttgtaccatttgaattgtgatctaacatgaactacaaaggtggcacctaagcta |
741 |
Q |
| |
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|||||||||||||||||||||||| | ||| || ||||||| ||||||||| ||| ||||||||||| |
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|
| T |
51360204 |
agatataagaaaacctttgtaccaatcgaagattgtgctaacataaactacaaaagtgacacctaagcta |
51360273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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