View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_40 (Length: 469)
Name: NF0856_low_40
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_40 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 171 - 469
Target Start/End: Complemental strand, 11401828 - 11401530
Alignment:
| Q |
171 |
ctcttgttattcaacaaactttgatttactttacaacggactacaagacaccctttatataggctagctttccttacataatgaataaacctaatcacta |
270 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11401828 |
ctcttgttattcaacacactttgatttactttacaacggactacaagacaccctttatataggctaggtttccttacataatgaataaacctaatcacta |
11401729 |
T |
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| Q |
271 |
agatataatgaagagacggttcagatattttaataaagatagtcttgcatgtaagcaagatacatgcttgatggctaagtttcttacaagtaaagataaa |
370 |
Q |
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| T |
11401728 |
agatataatgaagaggcgtttcagataatttaataaagatagtcttgcatgtaagcaagatacatgcttgatggctaagtttcttacaagtaaagataaa |
11401629 |
T |
|
| Q |
371 |
acaaacggtgctccttatcttcaagtggtccagtagtatcatcatttcttaatggtgaagacttgtcttctagaatgcttctaaaatcttctagtttat |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11401628 |
acaaacggtgctccttatcttcaagtggtccagtagtatcatcatttcttaatggtgaagacttgtcttctggaatgcttctaaaatcttctagtttat |
11401530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 11401965 - 11401830
Alignment:
| Q |
1 |
tgaagcaagctcaataaaggtcccaatattgtgagctttaagatgtgttatca----tcaaa-ggttc--aataactgaaatctaatttcgaaccgaacg |
93 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
11401965 |
tgaaccaagctcaataaagctcccaatattgtgagctttaagatgtgttatcaatcatcaaaaggttctcaataactgaaatctaatttcgaaccgaacg |
11401866 |
T |
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| Q |
94 |
atgttgtagttgttcatcataactctcttagaatat |
129 |
Q |
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| T |
11401865 |
atgttgtagttgttcatcataactctcttagaatat |
11401830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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