View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_41 (Length: 468)
Name: NF0856_low_41
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 29 - 460
Target Start/End: Complemental strand, 36341820 - 36341389
Alignment:
| Q |
29 |
agctcaatagcttaattcatctaaattccccctcactcacacacacatatagtttaccttccctaattacctcatctaaatatcatgcttatgtttatgc |
128 |
Q |
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| T |
36341820 |
agctcaatagcttaattcatctaaattccccctcactcacacacacatatactttaccttccctaattacctcatctaaatatcatgcttatgtttatgc |
36341721 |
T |
|
| Q |
129 |
atacataagaaagaatttttgtataccagaaagaattgcccatatctgccaagacaggaccacaggaattggggtgagtggtaggttccacatgcctcct |
228 |
Q |
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| T |
36341720 |
atacataagaaagaatttttgtataccagaaagaattgcccatatctgccaagacaggaccacaggaattggggtgagtggtaggttccacatgcctcct |
36341621 |
T |
|
| Q |
229 |
gcttcagccgtccaaatgctaaagttaaaaattgtgtcatcatcagacagcatatatgtatatatatgcaacctttcaatgagaaattcttatgttctct |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36341620 |
gcttcagccgtccaaatgctaaagttaaaaattgtgtcatcatcagacagcatatatgtatatatatgcaacctttcaatgagaaattcttatgttctct |
36341521 |
T |
|
| Q |
329 |
attattgagtgcgtatatatatcatcttagtaatagaaccattaatgatgcaattacacatggttttcaatgtcatgtgatctaaggaatatgtatatcc |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36341520 |
attattgagtgcgtatatatatcatcttagtaatagaaccattaatgatgcaattacacatggttttcaatgtcatgtgatctaaggaatatgtatatcc |
36341421 |
T |
|
| Q |
429 |
agctaactaactaattttatgcaacagctagg |
460 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
36341420 |
agctaactaactaattttatgcaactgctagg |
36341389 |
T |
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