View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_42 (Length: 467)
Name: NF0856_low_42
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 29 - 430
Target Start/End: Original strand, 23213649 - 23214050
Alignment:
| Q |
29 |
aactctacaaaactgatttgtaaaatcatagacgtctcctagttacaaagtcatttataagtcatatctcatcatatgttagactattaacacacccctc |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23213649 |
aactctacaaaactgatttgtaaaatcatagacgtctcctagttacaaagtcatttataagtcatatctcatcatatgttagactattaacacacccctc |
23213748 |
T |
|
| Q |
129 |
acacccacaattagatatctggagtgtgacccgagtgacccaatagtggatgaccaaacttatctaagaacctatgagtaaaaatcatcatagtacagta |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23213749 |
acacccacaattagatatctggagtgtgacccgagtgacccaatagtggatgaccaaacttatctaagaacctatgagtaaaaatcatcatagtacagta |
23213848 |
T |
|
| Q |
229 |
aatgtaatgacgacaaaacatgttccagtctctggacaggaagtgtttcaaggccttccattctagttttggtattcataaaaccgagaatacaacgtaa |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23213849 |
aatgtaatgacgacaaaacatgttccagtctctggacaggaagtgtttcaaggccttccattctagttttggtattcataaaaccgagaatacaacgtaa |
23213948 |
T |
|
| Q |
329 |
aaacactacggttaggtcatggtttgtggtaaagtcaaattcatgcataacatattttgattccttttcaaaagtacaatacaatcactaattgatattc |
428 |
Q |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23213949 |
aagcactacagttaggtcatggtttgtggtaaagtcaaattcatgcataacatattttgattccttttcaaaagtacaatacaatcactaattgatattc |
23214048 |
T |
|
| Q |
429 |
at |
430 |
Q |
| |
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|| |
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| T |
23214049 |
at |
23214050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 29434268 - 29434212
Alignment:
| Q |
118 |
acacacccctcacacccacaattagatatctggagtgtgacccgagtgacccaatag |
174 |
Q |
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|||||||||||||||||| || | || |||| |||||||||||||||| ||| |||| |
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| T |
29434268 |
acacacccctcacacccagaactggacatctagagtgtgacccgagtggcccgatag |
29434212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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