View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_43 (Length: 462)
Name: NF0856_low_43
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_43 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 32 - 462
Target Start/End: Original strand, 14267048 - 14267476
Alignment:
| Q |
32 |
tctataatttatcaagtactatatgtgtgtgtcaagagagaa-tgcctaaatagttgtacctaactaagtatttttcctgatttattgaaaattattagg |
130 |
Q |
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| T |
14267048 |
tctataatttatcaaatactatatgtgtgtgtcaaaagagaaatgcctaaatagttgtacctaactaagtatttttcctaatttattgaaaattattagg |
14267147 |
T |
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| Q |
131 |
cccgaatatggacttatatagttaggtgaattggtgctttgggagagggatatattaaggattgaagtggtaaaagaggttgtgagtttaactctcatca |
230 |
Q |
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| T |
14267148 |
cccgaatatggacttatatagttaggtgaattggtgctttgggagagggatatattaaggattgaagtggtaaaagaggttgtgagtttaactctcatca |
14267247 |
T |
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| Q |
231 |
cttacatacgaacaactgatatttattatcaaaatatcttatcgtgaatgttaagaatatattattacacatgtgaaaattaaaagagagatcgaaaggc |
330 |
Q |
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| T |
14267248 |
ctgacaaactaac-actaatatttattatcaaaatatctcatcgtaaatgttaagaatatattattacacatgtgaaaattaaaagagagatcgaaaggc |
14267346 |
T |
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| Q |
331 |
atcacaacttttccatgtaacaagttatacataaatttatactataaacccaaaatgaggaggatgactccctatgattctgtatgtatgtgtaagtatg |
430 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||||| |||||||||| |
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| T |
14267347 |
atcacaacttttccatgtaacaagttatgcataaatttatactataaacccaaaatgaggtgaatgactctctatgatcctgtatgta--tgtaagtatg |
14267444 |
T |
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| Q |
431 |
gcaacggtgtgaagacaagtttttcctctctt |
462 |
Q |
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| T |
14267445 |
gcaacggtgtgaagacaagtttttcctctctt |
14267476 |
T |
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