View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_45 (Length: 461)
Name: NF0856_low_45
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 62 - 451
Target Start/End: Complemental strand, 19175015 - 19174628
Alignment:
| Q |
62 |
ggccgtgtacaaaggtcatacattttttatatgtaaagcactaaaaacctaataactatacattgacatcgatattggtgataatttgataaaataaatt |
161 |
Q |
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| T |
19175015 |
ggccgtgtacaaaggtcatac-ttttttatatgtaaagcactaaaaacctaataactatacattgacatcgatattggtgataatttgagaaaataaatt |
19174917 |
T |
|
| Q |
162 |
aacttaacgtggacactgacaagtgtcaacatcaaacacaccttctatcatatatgtcgatgctatatagctaaacacccccctggcgtcttttccaatg |
261 |
Q |
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| T |
19174916 |
aacttaatgtggacactgacaagtgtcaacatcaaacacaccttctatcatatatgtcgatactatatagctaaacacccccc-ggcgtcttttccaatg |
19174818 |
T |
|
| Q |
262 |
agcgggaatagaaaataaataattattattgtccttagtttttatatacattcctcnnnnnnnnnnnnnnnnnnnnnnnntccatatttcttactctctc |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
19174817 |
agcgggaatagaaaataaataattattattgtccttagtttttatatacattcctctaaataaataaaaaataaaaaaaatccatattgcttactctctc |
19174718 |
T |
|
| Q |
362 |
aatacaatnnnnnnnttgcaatctgtgtgttcctctatcacatcactttttcttcatcatccttaatttcttcagtaattgttatctctg |
451 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19174717 |
aatacaataaaaaaattgcaatctgtgtgttcctctatcacatcactttttcttcatcatccttaatttcttcagtaattgttatctctg |
19174628 |
T |
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