View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_46 (Length: 458)
Name: NF0856_low_46
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 46 - 451
Target Start/End: Original strand, 38222101 - 38222502
Alignment:
| Q |
46 |
aaatgacaaatgttagtagttagttgttagattgcacaaatacacattgtttgaagattgtttaaatttgtttagatttaggctttgatactaaagtata |
145 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38222101 |
aaatgacaaatgctagtagttagttgttagattgcacaaatacacattgtt-gaagattgtttaaatttgtttagatttaggctttgatactaaagtata |
38222199 |
T |
|
| Q |
146 |
tgctgtgattttcatgttgtagacttcatggttggacaatcgccatgttgtatttggacatgtcatagatggaatggatgttgtgacgacacttgaatca |
245 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38222200 |
tgctgtgattttc---ttgtagacttcatggttggacaatcgccatgttgtatttggacatgtcattgatggaatggatgttgtgacgacacttgaatca |
38222296 |
T |
|
| Q |
246 |
caggagacaagcagctacaacaatggtcccttgaaatcatgcaaaattgttaactctggagaacttcctctagatggttgatctctcctctgaagtgctg |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38222297 |
caggagacaagcagctacaacaatggtcccttgaaatcatgcaaaattgttaactctggagaacttcctctagatggttgatctctcctctgaagtgctg |
38222396 |
T |
|
| Q |
346 |
tacattcttctgactgtcaattacaattcagttaaggagggtggttttggggaggagggagggggtagttcaattcatgcgtttggattgtcattgctct |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38222397 |
tacattcttctgactgtcaattacaattcagttaaggagggtggttttggggaggagggagggggtagttcaattcatgcgtttggattgtcattgctct |
38222496 |
T |
|
| Q |
446 |
ctgctg |
451 |
Q |
| |
|
|||||| |
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|
| T |
38222497 |
ctgctg |
38222502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 6871309 - 6871277
Alignment:
| Q |
46 |
aaatgacaaatgttagtagttagttgttagatt |
78 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
6871309 |
aaatgacaaatgttagtagttagttattagatt |
6871277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 149 - 259
Target Start/End: Original strand, 45505285 - 45505394
Alignment:
| Q |
149 |
tgtgattttcatgttgtagacttcatggttggacaatcgccatgttgtatttggacatgtcatagatggaatggatgttgtgacgacacttgaatcacag |
248 |
Q |
| |
|
||||||||| ||| |||||||| | ||||| |||||||| ||||| || ||||||||||| || ||||||||||||||||||| ||||||||| || ||| |
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|
| T |
45505285 |
tgtgatttt-atgatgtagactccgtggttagacaatcgacatgtcgtgtttggacatgttattgatggaatggatgttgtgaggacacttgagtctcag |
45505383 |
T |
|
| Q |
249 |
gagacaagcag |
259 |
Q |
| |
|
|| |||||||| |
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|
| T |
45505384 |
gaaacaagcag |
45505394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 48308090 - 48308121
Alignment:
| Q |
47 |
aatgacaaatgttagtagttagttgttagatt |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
48308090 |
aatgacaaatgttagtagttagttgttagatt |
48308121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 16622592 - 16622624
Alignment:
| Q |
46 |
aaatgacaaatgttagtagttagttgttagatt |
78 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
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|
| T |
16622592 |
aaatgacaaatgttagtaattagttgttagatt |
16622624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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