View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_low_47 (Length: 454)
Name: NF0856_low_47
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_47 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 30 - 454
Target Start/End: Complemental strand, 2744784 - 2744360
Alignment:
| Q |
30 |
gataaacaatcttcaacctcataaagtttatcttcaccgtcgaacatttggaccttccattttcttattgctgcaacaaaaacttgacaaaacctaggaa |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2744784 |
gataaacaatcttcaacctcatgaagtttatcttcaccgtcgaacatttggaccttccattttcttattgctgcaacaaaaacttgacaaaacctaggaa |
2744685 |
T |
|
| Q |
130 |
gagggtttccagcaggtttaaagtatctatattttgatgtgccacaaagaaacaaaaccaatgctagggcagcagaaccagctgatacacaaaatcccaa |
229 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2744684 |
gagggtttccaacaggtttaaagtatctatattttgatgtgccacaaagaaacaaaaccaatgctagggcagcagaaccagctgagacacaaaatcccaa |
2744585 |
T |
|
| Q |
230 |
agtccaaagtccatcatcttcaaaatagtccaatatggtgtttgagaagagtgatccaatgttcaaagccaaataaaaatagctaaaaaatgctattttt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2744584 |
agtccaaagtccatcatcttcaaaatagtccaatatggtgtttgagaagagtgatccaatgttcaaagccaaataaaaatagctaaaaaatgctattttt |
2744485 |
T |
|
| Q |
330 |
gagtgttgttcactaggatcactttcatcaaattgatcagcaccaaatgtagcaatggtaggttgatatcctccatttcctaaggctactagataaatgg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2744484 |
gagtgttgttcactaggatcactttcatcaaattgatcagcaccaaatgtagcaatggtaggttgatatcctccatttcctaaggctactagataaatgg |
2744385 |
T |
|
| Q |
430 |
atacatagaataaagtagtttcata |
454 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2744384 |
atacatagaataaagtagtttcata |
2744360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 243 - 415
Target Start/End: Complemental strand, 40743092 - 40742920
Alignment:
| Q |
243 |
tcatcttcaaaatagtccaatatggtgtttgagaagagtgatccaatgttcaaagccaaataaaaatagctaaaaaatgctatttttgagtgttgttcac |
342 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||| ||||| |||| |||||| ||||| ||||| |||||||||||||| | |||||| | || |
|
|
| T |
40743092 |
tcatcttcaaaatagcccaaaatagtgtttgagaaaagtgaaccaaggttcaatgccaagtaaaagtagctaaaaaatgccacttttgaataactctcct |
40742993 |
T |
|
| Q |
343 |
taggatcactttcatcaaattgatcagcaccaaatgtagcaatggtaggttgatatcctccatttcctaaggc |
415 |
Q |
| |
|
| | | | |||||||||||| |||||||||||||| |||||| | |||||||| ||||||||||||||||| |
|
|
| T |
40742992 |
ttgagtgatcttcatcaaattggtcagcaccaaatgttgcaatgtttggttgataccctccatttcctaaggc |
40742920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3540 times since January 2019
Visitors: 6174