View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_49 (Length: 446)
Name: NF0856_low_49
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 45201381 - 45201211
Alignment:
| Q |
30 |
acgagtatggttgttagtcttaatatgtgtcaattagctattacaatgcacgttgnnnnnnncaaatgtagtgtagttagatctaaggacaatgaattgc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45201381 |
acgagtatggttgttagtcttaatatgtgtcaattacctattacaatgcacgttgtttttttcaaatgtagtgtagttagatctaaggacaatgaattgc |
45201282 |
T |
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| Q |
130 |
cacatgcatgaaacaatttaatggcataaacaaagtcaaaacaaaacccacaagtctcgctgcttcactac |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201281 |
cacatgcatgaaacaatttaatggcatgaacaaagtcaaaacaaaacccacaagtctcgctgcttcactac |
45201211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 293 - 438
Target Start/End: Complemental strand, 45201117 - 45200972
Alignment:
| Q |
293 |
tgtaagaaagagaagagaccaagtttgttagtgaatgagtgacgaggagtgattttagagttagatttgaaaggagaaactcactcacaccattgatgaa |
392 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45201117 |
tgtaagaaagagaatagaccaagtttgttagtgaatgagtgacaaggagtgattttagagttagatttgaaaggagaaactcactcacaccattgattga |
45201018 |
T |
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| Q |
393 |
tgaatgaatgaatgatcacttgtgtgtattacttactattcttttc |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45201017 |
tgaatgaatgaatgatcacttgtgtgtattacttactattcttttc |
45200972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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