View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_57 (Length: 419)

Name: NF0856_low_57
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_57
NF0856_low_57
[»] chr3 (5 HSPs)
chr3 (77-237)||(11574412-11574571)
chr3 (28-85)||(11574732-11574789)
chr3 (236-290)||(11574323-11574377)
chr3 (318-355)||(31138428-31138465)
chr3 (323-360)||(39438511-39438548)
[»] chr6 (4 HSPs)
chr6 (352-410)||(30737340-30737398)
chr6 (317-355)||(334151-334189)
chr6 (322-356)||(28046195-28046229)
chr6 (322-355)||(4450273-4450306)
[»] chr7 (3 HSPs)
chr7 (322-362)||(45425457-45425497)
chr7 (320-355)||(25246782-25246817)
chr7 (321-362)||(3948058-3948099)
[»] chr2 (3 HSPs)
chr2 (317-360)||(22354955-22354998)
chr2 (322-362)||(29896311-29896351)
chr2 (319-355)||(39068722-39068758)
[»] chr4 (5 HSPs)
chr4 (317-355)||(11144677-11144715)
chr4 (322-355)||(43183010-43183043)
chr4 (319-347)||(7922264-7922292)
chr4 (320-360)||(24063223-24063263)
chr4 (317-349)||(29910478-29910510)
[»] chr8 (2 HSPs)
chr8 (317-362)||(28439963-28440008)
chr8 (322-362)||(7968957-7968997)
[»] chr5 (4 HSPs)
chr5 (317-362)||(40445987-40446032)
chr5 (317-349)||(25607070-25607102)
chr5 (320-360)||(31159435-31159475)
chr5 (322-362)||(34206231-34206271)
[»] chr1 (1 HSPs)
chr1 (319-360)||(31060221-31060262)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 8e-74; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 77 - 237
Target Start/End: Complemental strand, 11574571 - 11574412
Alignment:
Q  77 tatccatattatcatcatcatcatataataataagagaacaccaaccaaatgagactgtagcctgtaccttcatggctgatgcacatggtatgcgtcatt 176  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11574571 tatcaatattatcatcatcatcatataataataagagaacaccaaccaaatgagactgtagcctgtaccttcatggctgatgcacatggtatgtgtcatt 11574472  T
Q  177 tacctagttggatgtgcaataatgccattttgtattctgatagatgcacgatttgcatctt 237  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11574471 tacct-gttgcatgtgcaataatgccattttgtattctgatagatgcacgatttgcatctt 11574412  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 11574789 - 11574732
Alignment:
Q  28 gatataatttgcatttaacaaatgacatgcatttttcactagattgccttatccatat 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11574789 gatataatttgcatttaacaaatgacatgcatttttcactagattgccttatccatat 11574732  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 11574377 - 11574323
Alignment:
Q  236 ttcatacactaataaatcacaatcagagatagatgagactttagaaaaagttaga 290  Q
    ||||||||||||||||||||||||  ||||||| || |||||||||||| |||||    
T  11574377 ttcatacactaataaatcacaatcgaagatagacgaaactttagaaaaaattaga 11574323  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 31138465 - 31138428
Alignment:
Q  318 agatcttgcatatattatgcattgtctttatctactga 355  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  31138465 agatcttgcatatattatgcattgtctctatcaactga 31138428  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 39438548 - 39438511
Alignment:
Q  323 ttgcatatattatgcattgtctttatctactgaattaa 360  Q
    ||||||||||||||||||||||||||| || |||||||    
T  39438548 ttgcatatattatgcattgtctttatcaacagaattaa 39438511  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 30737398 - 30737340
Alignment:
Q  352 ctgaattaaaccaatgatggggtagaggaaccttgatcttcccttcattattgagttag 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30737398 ctgaattaaaccaatgatggggtagaggaaccttgatcttcccttcattattgaattag 30737340  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 334189 - 334151
Alignment:
Q  317 cagatcttgcatatattatgcattgtctttatctactga 355  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  334189 cagaccttgcatatattatgcattgtctttatcaactga 334151  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 356
Target Start/End: Original strand, 28046195 - 28046229
Alignment:
Q  322 cttgcatatattatgcattgtctttatctactgaa 356  Q
    |||||||||||||||||||||||||||| ||||||    
T  28046195 cttgcatatattatgcattgtctttatcaactgaa 28046229  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 4450306 - 4450273
Alignment:
Q  322 cttgcatatattatgcattgtctttatctactga 355  Q
    |||||||||||||||||||||||||||| |||||    
T  4450306 cttgcatatattatgcattgtctttatcaactga 4450273  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 45425497 - 45425457
Alignment:
Q  322 cttgcatatattatgcattgtctttatctactgaattaaac 362  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  45425497 cttgcatatattatgcattgtctttatcaactgagttaaac 45425457  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 355
Target Start/End: Complemental strand, 25246817 - 25246782
Alignment:
Q  320 atcttgcatatattatgcattgtctttatctactga 355  Q
    |||||||||||||||||||||||||||||| |||||    
T  25246817 atcttgcatatattatgcattgtctttatcaactga 25246782  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 3948099 - 3948058
Alignment:
Q  321 tcttgcatatattatgcattgtctttatctactgaattaaac 362  Q
    |||||||||||||||||||||||| |||| ||||| ||||||    
T  3948099 tcttgcatatattatgcattgtctctatcaactgagttaaac 3948058  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 22354955 - 22354998
Alignment:
Q  317 cagatcttgcatatattatgcattgtctttatctactgaattaa 360  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||    
T  22354955 cagatcttgcatatattatgcattgtccttaccgactgaattaa 22354998  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 29896311 - 29896351
Alignment:
Q  322 cttgcatatattatgcattgtctttatctactgaattaaac 362  Q
    ||||||||||||||||||||| | |||| ||||||||||||    
T  29896311 cttgcatatattatgcattgtttctatcaactgaattaaac 29896351  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 39068722 - 39068758
Alignment:
Q  319 gatcttgcatatattatgcattgtctttatctactga 355  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  39068722 gatcttgcatatattatgcattgtccttatcaactga 39068758  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 11144677 - 11144715
Alignment:
Q  317 cagatcttgcatatattatgcattgtctttatctactga 355  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  11144677 cagaccttgcatatattatgcattgtctttatcaactga 11144715  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Original strand, 43183010 - 43183043
Alignment:
Q  322 cttgcatatattatgcattgtctttatctactga 355  Q
    |||||||||||||||||||||||||||| |||||    
T  43183010 cttgcatatattatgcattgtctttatcaactga 43183043  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 347
Target Start/End: Original strand, 7922264 - 7922292
Alignment:
Q  319 gatcttgcatatattatgcattgtcttta 347  Q
    |||||||||||||||||||||||||||||    
T  7922264 gatcttgcatatattatgcattgtcttta 7922292  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 24063223 - 24063263
Alignment:
Q  320 atcttgcatatattatgcattgtctttatctactgaattaa 360  Q
    ||||||||||||||||||||||||| |||| ||||| ||||    
T  24063223 atcttgcatatattatgcattgtctctatcaactgagttaa 24063263  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 349
Target Start/End: Complemental strand, 29910510 - 29910478
Alignment:
Q  317 cagatcttgcatatattatgcattgtctttatc 349  Q
    ||||||||||||||||||||||||||| |||||    
T  29910510 cagatcttgcatatattatgcattgtccttatc 29910478  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 28440008 - 28439963
Alignment:
Q  317 cagatcttgcatatattatgcattgtctttatctactgaattaaac 362  Q
    |||| ||| ||||||||||||||| |||||||| ||||||||||||    
T  28440008 cagaccttacatatattatgcattatctttatcaactgaattaaac 28439963  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 7968957 - 7968997
Alignment:
Q  322 cttgcatatattatgcattgtctttatctactgaattaaac 362  Q
    |||||||||||||||||||||| ||| | ||||||||||||    
T  7968957 cttgcatatattatgcattgtccttaccaactgaattaaac 7968997  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 40446032 - 40445987
Alignment:
Q  317 cagatcttgcatatattatgcattgtctttatctactgaattaaac 362  Q
    |||| |||||||||||||||||||||| ||||| ||||| ||||||    
T  40446032 cagaccttgcatatattatgcattgtccttatcaactgagttaaac 40445987  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 25607070 - 25607102
Alignment:
Q  317 cagatcttgcatatattatgcattgtctttatc 349  Q
    |||| ||||||||||||||||||||||||||||    
T  25607070 cagaccttgcatatattatgcattgtctttatc 25607102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 31159475 - 31159435
Alignment:
Q  320 atcttgcatatattatgcattgtctttatctactgaattaa 360  Q
    ||||||||||||||||| |||||||||||| ||||| ||||    
T  31159475 atcttgcatatattatgtattgtctttatcaactgagttaa 31159435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 34206271 - 34206231
Alignment:
Q  322 cttgcatatattatgcattgtctttatctactgaattaaac 362  Q
    |||||||||||||||||||||||||| | ||||| ||||||    
T  34206271 cttgcatatattatgcattgtctttaccaactgagttaaac 34206231  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 31060221 - 31060262
Alignment:
Q  319 gatcttgcatatattatgcattgtctttatctactgaattaa 360  Q
    |||||||||||||||||||||| ||| |||| ||||||||||    
T  31060221 gatcttgcatatattatgcattatctctatcaactgaattaa 31060262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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