View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_low_58 (Length: 417)
Name: NF0856_low_58
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_58 |
 | |
|
| [»] scaffold0449 (1 HSPs) |
| | |
|
| [»] scaffold0524 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 43 - 407
Target Start/End: Complemental strand, 50831373 - 50831008
Alignment:
| Q |
43 |
tcttttagtgtgaaatgtcatattactggttgttagacatgatattagctgcacattgttggatgtgtgtattatgtatgatattatatttttaattatt |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50831373 |
tcttttagtgtgaaatgtcatattactggttgttagacatgatattacctgcacattgttggatgtgtgtattatgtatgatattatatttttaattatt |
50831274 |
T |
|
| Q |
143 |
tctaaatgtttatgccgcacgggtaaacgatctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaactttt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50831273 |
tctaaatgtttatgccgcacgggtaaacgatctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaactttt |
50831174 |
T |
|
| Q |
243 |
gctttaactacatttaatgtcaaattcaaatttcaaatccccctcccacaaattctcactaactctgcattaattgcacatgcggtttaccaa-aaaata |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
50831173 |
gctttaactacatttaatgtcaaattcaaatttcaaatccccctcccacaaattctcactaactctgcattaagtgcacatgcggtttaccaaaaaaata |
50831074 |
T |
|
| Q |
342 |
caggtacaattaatcggtaattaccgagacatgttcttctttcaatatgccaacctctcctctctg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50831073 |
caggtacaattaatcggtaattaccgagacatgttcttctttcaatatgccaacctctcctctctg |
50831008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 43 - 407
Target Start/End: Original strand, 50844480 - 50844845
Alignment:
| Q |
43 |
tcttttagtgtgaaatgtcatattactggttgttagacatgatattagctgcacattgttggatgtgtgtattatgtatgatattatatttttaattatt |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50844480 |
tcttttagtgtgaaatgtcatattactggttgttagacatgatattacctgcacattgttggatgtgtgtattatgtatgatattatatttttaattatt |
50844579 |
T |
|
| Q |
143 |
tctaaatgtttatgccgcacgggtaaacgatctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaactttt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50844580 |
tctaaatgtttatgccgcacgggtaaacgatctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaactttt |
50844679 |
T |
|
| Q |
243 |
gctttaactacatttaatgtcaaattcaaatttcaaatccccctcccacaaattctcactaactctgcattaattgcacatgcggtttacc-aaaaaata |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
50844680 |
gctttaactacatttaatgtcaaattcaaatttcaaatccccctcccacaaattctcactaactctgcattaagtgcacatgcggtttaccaaaaaaata |
50844779 |
T |
|
| Q |
342 |
caggtacaattaatcggtaattaccgagacatgttcttctttcaatatgccaacctctcctctctg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50844780 |
caggtacaattaatcggtaattaccgagacatgttcttctttcaatatgccaacctctcctctctg |
50844845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 23217106 - 23217002
Alignment:
| Q |
178 |
tcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaaatttca |
277 |
Q |
| |
|
|||||||||||||| |||| || || |||||| |||||||||||||||| || | ||||| |||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
23217106 |
tcctaatgtacaatgcacagaagacctaaaaa-ccctaatccttgatttagagcgggaaaactttgctttaactgcacttaatgtacaattcaaatttca |
23217008 |
T |
|
| Q |
278 |
aatccc |
283 |
Q |
| |
|
|||||| |
|
|
| T |
23217007 |
aatccc |
23217002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 5574245 - 5574191
Alignment:
| Q |
102 |
tggatgtgtgtattatgtatgatattatatttttaattatttctaaatgtttatg |
156 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||||||||||| |||||| |
|
|
| T |
5574245 |
tggatgtgtgtattatgtatgattttgtacttttaattatttctaaatttttatg |
5574191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 30766064 - 30765990
Alignment:
| Q |
207 |
aaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaaatttcaaatc |
281 |
Q |
| |
|
|||||||||||| |||||| || | ||||| |||||| |||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
30766064 |
aaaaccctaatctatgatttagagcgggaaaattttgccttaactacatttgatgtaaaattcgaatttcaaatc |
30765990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 281
Target Start/End: Original strand, 4865129 - 4865238
Alignment:
| Q |
172 |
atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaa |
271 |
Q |
| |
|
||||| |||||| |||||| ||||||||| || |||||||||||||||| |||||| | ||||| || || |||||| |||||||||| || || | |
|
|
| T |
4865129 |
atctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtgatttaaccacatttaatggcatttttga |
4865228 |
T |
|
| Q |
272 |
atttcaaatc |
281 |
Q |
| |
|
|||||||||| |
|
|
| T |
4865229 |
atttcaaatc |
4865238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 281
Target Start/End: Complemental strand, 55041573 - 55041464
Alignment:
| Q |
172 |
atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaa |
271 |
Q |
| |
|
||||| |||||| |||||| ||||||||| || |||||||||||||||| ||||| | ||||| || || |||||| |||||||||| || || | |
|
|
| T |
55041573 |
atctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggctttgagcgggaaaattgtgatttaaccacatttaatggcatttttga |
55041474 |
T |
|
| Q |
272 |
atttcaaatc |
281 |
Q |
| |
|
|||||||||| |
|
|
| T |
55041473 |
atttcaaatc |
55041464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 172 - 283
Target Start/End: Original strand, 11074871 - 11074981
Alignment:
| Q |
172 |
atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaa |
271 |
Q |
| |
|
||||| |||||||||||||| ||||||| || ||||| ||||||||||||||||| || | ||||| ||||||||||||||| ||||||| ||||||| |
|
|
| T |
11074871 |
atctaatcctaatgtacaatgcacacaagacctaaaa-accctaatccttgatttagagcgggaaaactttgctttaactacacttaatgtacaattcaa |
11074969 |
T |
|
| Q |
272 |
atttcaaatccc |
283 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11074970 |
atttcaaatccc |
11074981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 173 - 285
Target Start/End: Original strand, 34703777 - 34703889
Alignment:
| Q |
173 |
tctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaaa |
272 |
Q |
| |
|
|||| |||||||||||||| ||||||| || |||||||||||||||||||||||||| | ||||| |||||||||| | |||||| | ||||||| || |
|
|
| T |
34703777 |
tctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaaatttgctttaaatgcatttactctcaaatttgaa |
34703876 |
T |
|
| Q |
273 |
tttcaaatccccc |
285 |
Q |
| |
|
||||||| |||| |
|
|
| T |
34703877 |
attcaaattcccc |
34703889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 28549424 - 28549312
Alignment:
| Q |
173 |
tctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaaa |
272 |
Q |
| |
|
|||| |||||||||||||| ||||||| || |||||||||||||||||||||||||| | ||||| |||||||||| | |||||| | ||||||| || |
|
|
| T |
28549424 |
tctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaaatttgctttaaatgcatttactctcaaatttgaa |
28549325 |
T |
|
| Q |
273 |
tttcaaatccccc |
285 |
Q |
| |
|
||||||| |||| |
|
|
| T |
28549324 |
attcaaattcccc |
28549312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 173 - 285
Target Start/End: Original strand, 41866994 - 41867106
Alignment:
| Q |
173 |
tctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaaa |
272 |
Q |
| |
|
|||| |||||||||||||| ||||||| || |||||||||||||||||||||||||| | ||||| |||||||||| | |||||| | ||||||| || |
|
|
| T |
41866994 |
tctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaaatttgctttaaatgcatttactctcaaatttgaa |
41867093 |
T |
|
| Q |
273 |
tttcaaatccccc |
285 |
Q |
| |
|
||||||| |||| |
|
|
| T |
41867094 |
attcaaattcccc |
41867106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 283
Target Start/End: Original strand, 33865606 - 33865716
Alignment:
| Q |
172 |
atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaa |
271 |
Q |
| |
|
||||| |||||||||||||| ||||||| || ||||| ||||||||| ||||||| || | ||||| |||||||||||| || ||||||| ||||||| |
|
|
| T |
33865606 |
atctaatcctaatgtacaatgcacacaagacctaaaa-accctaatctttgatttagagcgggaaaactttgctttaactgcacttaatgtacaattcaa |
33865704 |
T |
|
| Q |
272 |
atttcaaatccc |
283 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33865705 |
atttcaaatccc |
33865716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 261
Target Start/End: Original strand, 13946656 - 13946745
Alignment:
| Q |
172 |
atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatg |
261 |
Q |
| |
|
||||| |||||| |||||| ||||||||| || |||||||||||||||| |||||| | ||||| || || |||||| |||||||||| |
|
|
| T |
13946656 |
atctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtgatttaaccacatttaatg |
13946745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 5790584 - 5790508
Alignment:
| Q |
207 |
aaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaaatttcaaatccc |
283 |
Q |
| |
|
|||||||||||||| |||||| | | ||||| || ||| ||||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
5790584 |
aaaaccctaatcctagattttaagcgggaaaattctgccttaactacacttaatgtaaaatttcaatttcaaatccc |
5790508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0449 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 5402 - 5451
Alignment:
| Q |
100 |
gttggatgtgtgtattatgtatgatattatatttttaattatttctaaat |
149 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5402 |
gttggatatgtgtattatgtatgatattgcatttttaattatttctaaat |
5451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 30441363 - 30441290
Alignment:
| Q |
172 |
atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgct |
245 |
Q |
| |
|
||||| |||||||||||||| |||||||||| | |||||||||| ||| ||||| || | ||||||||||||| |
|
|
| T |
30441363 |
atctaatcctaatgtacaatgcacacaacacctctaaaaccctaaacctagatttagagcgggaaacttttgct |
30441290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0524 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 283
Target Start/End: Original strand, 5141 - 5253
Alignment:
| Q |
172 |
atctagtcctaatgtacaatacacacaaca-cttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattca |
270 |
Q |
| |
|
||||| |||||||||||||| | |||| | || |||||||||||| ||| |||| ||| | ||||| || ||| ||||||||| ||| ||| |||||| |
|
|
| T |
5141 |
atctaatcctaatgtacaatgtaaacaagatctaaaaaaaccctaaacctagattatgagcaggaaaattctgccttaactacacttattgttaaattcc |
5240 |
T |
|
| Q |
271 |
aatttcaaatccc |
283 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5241 |
aatttcaaatccc |
5253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2495 times since January 2019
Visitors: 6164