View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_59 (Length: 416)
Name: NF0856_low_59
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 15668956 - 15669017
Alignment:
| Q |
57 |
atcattataacaacatgaatatcacttgaaatgaaaataaaagattcaacaaaatacagatc |
118 |
Q |
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| T |
15668956 |
atcattataacaacatgaatatcacttgaaatgaaaataaaagattcaacaaaatacagatc |
15669017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 15669049 - 15669090
Alignment:
| Q |
150 |
aagtaatgaaactatacaataaacaaaatagaaagctagtag |
191 |
Q |
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| T |
15669049 |
aagtaatgaaactatataataaacaaaatagaaagttagtag |
15669090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 19608233 - 19608274
Alignment:
| Q |
150 |
aagtaatgaaactatacaataaacaaaatagaaagctagtag |
191 |
Q |
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|||||||||||||||| ||||||||| ||||||| ||||||| |
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| T |
19608233 |
aagtaatgaaactatataataaacaacatagaaatctagtag |
19608274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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