View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_61 (Length: 411)

Name: NF0856_low_61
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_61
NF0856_low_61
[»] chr2 (12 HSPs)
chr2 (286-377)||(13049163-13049253)
chr2 (1-105)||(13049252-13049366)
chr2 (213-282)||(15562302-15562371)
chr2 (213-282)||(12918631-12918700)
chr2 (213-282)||(39819161-39819230)
chr2 (111-170)||(7755334-7755394)
chr2 (125-169)||(15562217-15562261)
chr2 (251-286)||(7755463-7755498)
chr2 (216-273)||(9402263-9402321)
chr2 (136-170)||(12918557-12918591)
chr2 (136-170)||(39819087-39819121)
chr2 (125-158)||(13421801-13421834)
[»] chr6 (8 HSPs)
chr6 (213-282)||(11448155-11448224)
chr6 (214-283)||(2543734-2543803)
chr6 (125-170)||(2543843-2543888)
chr6 (125-159)||(28581745-28581779)
chr6 (125-165)||(369524-369564)
chr6 (125-165)||(16193834-16193874)
chr6 (246-282)||(369542-369578)
chr6 (112-159)||(11448056-11448104)
[»] chr1 (18 HSPs)
chr1 (213-284)||(28739302-28739373)
chr1 (213-282)||(9379916-9379985)
chr1 (215-283)||(28045419-28045487)
chr1 (222-288)||(44381902-44381969)
chr1 (213-287)||(50754822-50754896)
chr1 (112-170)||(28739413-28739472)
chr1 (125-170)||(50754737-50754782)
chr1 (215-260)||(35251189-35251234)
chr1 (213-283)||(9884939-9885009)
chr1 (125-165)||(10449461-10449501)
chr1 (215-269)||(49200058-49200113)
chr1 (112-149)||(718981-719019)
chr1 (128-165)||(28810065-28810102)
chr1 (125-166)||(44291061-44291102)
chr1 (111-147)||(44801884-44801921)
chr1 (213-268)||(6539559-6539619)
chr1 (112-147)||(10449579-10449615)
chr1 (129-165)||(44801769-44801805)
[»] chr3 (10 HSPs)
chr3 (215-283)||(22893890-22893958)
chr3 (213-283)||(11512485-11512555)
chr3 (112-170)||(11512386-11512445)
chr3 (123-168)||(31342018-31342063)
chr3 (112-165)||(22894004-22894058)
chr3 (125-163)||(36738368-36738406)
chr3 (113-165)||(29081704-29081757)
chr3 (242-282)||(25790901-25790941)
chr3 (125-165)||(28309088-28309128)
chr3 (224-275)||(29081596-29081648)
[»] chr7 (12 HSPs)
chr7 (213-280)||(17272797-17272864)
chr7 (222-282)||(43500088-43500148)
chr7 (113-171)||(46282868-46282927)
chr7 (113-170)||(7211860-7211918)
chr7 (113-170)||(17272699-17272757)
chr7 (125-170)||(29681778-29681823)
chr7 (125-165)||(32315720-32315760)
chr7 (126-169)||(7211999-7212042)
chr7 (214-257)||(29681863-29681906)
chr7 (112-165)||(25099354-25099408)
chr7 (135-165)||(35418277-35418307)
chr7 (242-282)||(29681900-29681940)
[»] chr5 (14 HSPs)
chr5 (112-169)||(9177946-9178004)
chr5 (215-282)||(5215560-5215627)
chr5 (125-170)||(5215670-5215715)
chr5 (223-266)||(19417552-19417595)
chr5 (123-169)||(25879406-25879452)
chr5 (245-282)||(41288004-41288041)
chr5 (125-165)||(12605660-12605700)
chr5 (110-165)||(22097488-22097544)
chr5 (215-282)||(36568804-36568871)
chr5 (125-159)||(23219393-23219427)
chr5 (213-255)||(29385303-29385345)
chr5 (136-170)||(29385385-29385419)
chr5 (127-165)||(42772070-42772108)
chr5 (109-148)||(29385416-29385456)
[»] chr4 (14 HSPs)
chr4 (224-273)||(46321444-46321494)
chr4 (217-266)||(6608451-6608500)
chr4 (112-165)||(30023650-30023703)
chr4 (213-282)||(31846782-31846851)
chr4 (125-170)||(38324932-38324977)
chr4 (125-169)||(53261103-53261147)
chr4 (215-269)||(2254632-2254686)
chr4 (123-165)||(54223564-54223606)
chr4 (217-282)||(31012229-31012294)
chr4 (215-269)||(32008336-32008391)
chr4 (224-269)||(31012130-31012176)
chr4 (224-269)||(31846900-31846946)
chr4 (123-159)||(33380614-33380650)
chr4 (125-165)||(36273062-36273102)
[»] chr8 (5 HSPs)
chr8 (125-169)||(45051339-45051383)
chr8 (224-284)||(16687510-16687571)
chr8 (213-285)||(43465184-43465259)
chr8 (125-161)||(33763471-33763507)
chr8 (138-170)||(43465112-43465144)
[»] scaffold1315 (1 HSPs)
scaffold1315 (125-165)||(1826-1866)
[»] scaffold1293 (1 HSPs)
scaffold1293 (125-165)||(205-245)
[»] scaffold0110 (1 HSPs)
scaffold0110 (125-165)||(26513-26553)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 286 - 377
Target Start/End: Complemental strand, 13049253 - 13049163
Alignment:
Q  286 atggtcatacatgcacagccaggtgagctggcttgctcccaaaaccttaggttgctataatttgcaaatgcaataaatttaacattcacagt 377  Q
    |||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  13049253 atggtcatacatgcacaaacaggtgagctggcttactcccaaaaccttaggttgctataatttgcaaaagcaataaa-ttaacattcacagt 13049163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 13049366 - 13049252
Alignment:
Q  1 taattgtaaaaatgttagccacaatacatgacagta----------catatatataagagggtacctaaggtagtaaaatttaccaagtactgtagcaat 90  Q
    |||| |||||||||||||||||||||||||||||||          |||| ||||||||||||||||||||||||||||||| |||||| ||  ||||||    
T  13049366 taatcgtaaaaatgttagccacaatacatgacagtaactttcagtacataaatataagagggtacctaaggtagtaaaattttccaagtgcttcagcaat 13049267  T
Q  91 taatttccatcacat 105  Q
    |||||||||||||||    
T  13049266 taatttccatcacat 13049252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 15562302 - 15562371
Alignment:
Q  213 gcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 282  Q
    |||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  15562302 gcacacttgtaacattgtgattggtaatgtcaccaatatcaccaaccataatgtcacccaaatattatcc 15562371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 12918631 - 12918700
Alignment:
Q  213 gcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 282  Q
    ||||| || ||||||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||    
T  12918631 gcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 12918700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 39819161 - 39819230
Alignment:
Q  213 gcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 282  Q
    |||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||    
T  39819161 gcacacttgtaatattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 39819230  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 7755334 - 7755394
Alignment:
Q  111 cgggtagcacttga-tgacattgtggttggtgacattggccaaccacaatatcacatgtgg 170  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  7755334 cgggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtgg 7755394  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 15562217 - 15562261
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcacatgtg 169  Q
    |||||||||||||| |||||||||||||||||||| |||||||||    
T  15562217 tgacattgtggttgatgacattggccaaccacaatgtcacatgtg 15562261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 7755463 - 7755498
Alignment:
Q  251 tcaccaaccacaatgtcactcaaatattatcccata 286  Q
    ||||||||||||||||||| ||||||||||||||||    
T  7755463 tcaccaaccacaatgtcacccaaatattatcccata 7755498  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 9402263 - 9402321
Alignment:
Q  216 cacttataacattgtggttggt-aatatcaccaatatcaccaaccacaatgtcactcaa 273  Q
    ||||||||||||| ||||| || ||| ||| ||||||||| ||||||||||||||||||    
T  9402263 cacttataacattatggttagtcaatgtcatcaatatcacaaaccacaatgtcactcaa 9402321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 12918557 - 12918591
Alignment:
Q  136 ttggtgacattggccaaccacaatatcacatgtgg 170  Q
    |||||||||||||||||||||||| ||||||||||    
T  12918557 ttggtgacattggccaaccacaatgtcacatgtgg 12918591  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 39819087 - 39819121
Alignment:
Q  136 ttggtgacattggccaaccacaatatcacatgtgg 170  Q
    |||||||||||||||||||||||| ||||||||||    
T  39819087 ttggtgacattggccaaccacaatgtcacatgtgg 39819121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 13421834 - 13421801
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaa 158  Q
    ||||||||||||||||||||||| ||||||||||    
T  13421834 tgacattgtggttggtgacattgaccaaccacaa 13421801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 11448155 - 11448224
Alignment:
Q  213 gcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 282  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  11448155 gcacacttataacattgtggttggtaatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 11448224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 2543803 - 2543734
Alignment:
Q  214 cacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatccc 283  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||    
T  2543803 cacacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 2543734  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 2543888 - 2543843
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcacatgtgg 170  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  2543888 tgacattgtggttggtgacattggccaaccacaatgtcacatgtgg 2543843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 159
Target Start/End: Original strand, 28581745 - 28581779
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaat 159  Q
    |||||||||||||||||||||||||||||||||||    
T  28581745 tgacattgtggttggtgacattggccaaccacaat 28581779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 369564 - 369524
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  369564 tgacattgtggttggtgacattgaccaaccacaatgtcaca 369524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 16193874 - 16193834
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  16193874 tgacattgtggttggtgacattggtcaaccacaatgtcaca 16193834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 369542 - 369578
Alignment:
Q  246 caatatcaccaaccacaatgtcactcaaatattatcc 282  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  369542 caatgtcaccaaccacaatgtcactcaagtattatcc 369578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 11448056 - 11448104
Alignment:
Q  112 gggtagcacttga-tgacattgtggttggtgacattggccaaccacaat 159  Q
    ||||||||||||  |||||||||||||||| | ||||||||||||||||    
T  11448056 gggtagcacttgggtgacattgtggttggtaatattggccaaccacaat 11448104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 28739373 - 28739302
Alignment:
Q  213 gcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatccca 284  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||    
T  28739373 gcacacttgtaacattgtggttggtaatgtcaccaatatcaccaaccacaatatcacccaagtattatccca 28739302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 9379916 - 9379985
Alignment:
Q  213 gcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 282  Q
    |||||||| ||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||||    
T  9379916 gcacacttgtaacattgtggttggtaatgttaccaatgtcaccaaccacaatgtcacccaaatattatcc 9379985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 28045419 - 28045487
Alignment:
Q  215 acacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatccc 283  Q
    |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||    
T  28045419 acacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 28045487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 44381969 - 44381902
Alignment:
Q  222 taacattgtggttggt-aatatcaccaatatcaccaaccacaatgtcactcaaatattatcccatatg 288  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  44381969 taacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcacccaaatattatcccttatg 44381902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 50754822 - 50754896
Alignment:
Q  213 gcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcccatat 287  Q
    |||||||| |||||||||||||| |||| |||||||| ||||||||||||||||||| ||| |||||||| ||||    
T  50754822 gcacacttgtaacattgtggttgataatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccaatat 50754896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 28739472 - 28739413
Alignment:
Q  112 gggtagcacttga-tgacattgtggttggtgacattggccaaccacaatatcacatgtgg 170  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  28739472 gggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtgg 28739413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 50754737 - 50754782
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcacatgtgg 170  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  50754737 tgacattgtggttggtgacattggccaaccacaatgtcacatgtgg 50754782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 35251234 - 35251189
Alignment:
Q  215 acacttataacattgtggttggtaatatcaccaatatcaccaacca 260  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||    
T  35251234 acacttgtaacattgtggttggtaatgtcaccaatatcaccaacca 35251189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 9884939 - 9885009
Alignment:
Q  213 gcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatccc 283  Q
    |||||||| |||||||||||||| |||| |||| ||| |||||||||||||| |||| ||| ||| |||||    
T  9884939 gcacacttgtaacattgtggttgataatgtcacgaatgtcaccaaccacaatatcacccaagtatcatccc 9885009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 10449461 - 10449501
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  10449461 tgacattgtggttggtgacattgaccaaccacaatgtcaca 10449501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 49200058 - 49200113
Alignment:
Q  215 acacttataacattgtggttggt-aatatcaccaatatcaccaaccacaatgtcac 269  Q
    |||||| | |||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  49200058 acacttgtgacattgtggttggtcaatgtcatcaatatcaccaaccacaatgtcac 49200113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 718981 - 719019
Alignment:
Q  112 gggtagcacttga-tgacattgtggttggtgacattggc 149  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  718981 gggtagcacttgagtgacattgtggttggtgacattggc 719019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 28810102 - 28810065
Alignment:
Q  128 cattgtggttggtgacattggccaaccacaatatcaca 165  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  28810102 cattgtggttggtgacattggtcaaccacaatgtcaca 28810065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 44291061 - 44291102
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcacat 166  Q
    ||||| |||||||||||||| || ||||||||||||||||||    
T  44291061 tgacaatgtggttggtgacactgaccaaccacaatatcacat 44291102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 44801921 - 44801884
Alignment:
Q  111 cgggtagcacttg-atgacattgtggttggtgacattg 147  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  44801921 cgggtagcacttggatgacattgtggttggtgacattg 44801884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 6539619 - 6539559
Alignment:
Q  213 gcacacttataacattgtggttggta-----atatcaccaatatcaccaaccacaatgtca 268  Q
    |||||||| |||||||||||||||||     ||||||||||| | ||||||||||||||||    
T  6539619 gcacacttgtaacattgtggttggtaacatcatatcaccaatgttaccaaccacaatgtca 6539559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 147
Target Start/End: Complemental strand, 10449615 - 10449579
Alignment:
Q  112 gggtagcacttg-atgacattgtggttggtgacattg 147  Q
    |||||||||||| ||||||||||||||||||||||||    
T  10449615 gggtagcacttggatgacattgtggttggtgacattg 10449579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 44801769 - 44801805
Alignment:
Q  129 attgtggttggtgacattggccaaccacaatatcaca 165  Q
    |||||||||| |||||||||||||||||||| |||||    
T  44801769 attgtggttgatgacattggccaaccacaatgtcaca 44801805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 22893958 - 22893890
Alignment:
Q  215 acacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatccc 283  Q
    |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||    
T  22893958 acacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 22893890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 11512485 - 11512555
Alignment:
Q  213 gcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatccc 283  Q
    |||||||| ||||||||||||||||||| |||||||| |||||||||| |||||||| ||| |||||||||    
T  11512485 gcacacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccataatgtcacccaagtattatccc 11512555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 11512386 - 11512445
Alignment:
Q  112 gggtagcacttga-tgacattgtggttggtgacattggccaaccacaatatcacatgtgg 170  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  11512386 gggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtgg 11512445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 31342018 - 31342063
Alignment:
Q  123 gatgacattgtggttggtgacattggccaaccacaatatcacatgt 168  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  31342018 gatgacattgtggttggtgacattggccaaccacaatgtcacatgt 31342063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 22894058 - 22894004
Alignment:
Q  112 gggtagcacttga-tgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||| |||||    
T  22894058 gggtagcacttgggtgacattgtggttggtgacattgaccaaccacaatgtcaca 22894004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 36738406 - 36738368
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatca 163  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  36738406 tgacattgtggttggtgacattggtcaactacaatatca 36738368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 29081757 - 29081704
Alignment:
Q  113 ggtagcacttga-tgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    |||||||||||  ||| |||||||||||||||||||| |||||||||| |||||    
T  29081757 ggtagcacttgggtgatattgtggttggtgacattggtcaaccacaatgtcaca 29081704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 25790901 - 25790941
Alignment:
Q  242 tcaccaatatcaccaaccacaatgtcactcaaatattatcc 282  Q
    |||||||| |||||||||| |||||||| ||||||||||||    
T  25790901 tcaccaatgtcaccaaccataatgtcacccaaatattatcc 25790941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 28309088 - 28309128
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    |||||||||||||| ||||||||  ||||||||||||||||    
T  28309088 tgacattgtggttgatgacattgatcaaccacaatatcaca 28309128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 29081648 - 29081596
Alignment:
Q  224 acattgtggttggt-aatatcaccaatatcaccaaccacaatgtcactcaaat 275  Q
    |||||||||||||| ||| ||||| || ||||||||||||||||||| |||||    
T  29081648 acattgtggttggtcaatgtcaccgatgtcaccaaccacaatgtcacccaaat 29081596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 17272797 - 17272864
Alignment:
Q  213 gcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattat 280  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||    
T  17272797 gcacacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattat 17272864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 43500088 - 43500148
Alignment:
Q  222 taacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 282  Q
    ||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||    
T  43500088 taacattgtggttggtaatgtcaccaatatcaccaaccacaatatcgcccaaatattatcc 43500148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 46282868 - 46282927
Alignment:
Q  113 ggtagcacttga-tgacattgtggttggtgacattggccaaccacaatatcacatgtggt 171  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||    
T  46282868 ggtagcacttgagtgacattgtagttggtgacattggccaaccacaatatcacaagtggt 46282927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 7211860 - 7211918
Alignment:
Q  113 ggtagcacttga-tgacattgtggttggtgacattggccaaccacaatatcacatgtgg 170  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  7211860 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtgg 7211918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 17272699 - 17272757
Alignment:
Q  113 ggtagcacttga-tgacattgtggttggtgacattggccaaccacaatatcacatgtgg 170  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  17272699 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtgg 17272757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 29681778 - 29681823
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcacatgtgg 170  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||    
T  29681778 tgacattgtggttggtgacattggccaaccacaacgtcacatgtgg 29681823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 32315720 - 32315760
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  32315720 tgacattgtggttggtgacattggccaaccacaatgtcaca 32315760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 7212042 - 7211999
Alignment:
Q  126 gacattgtggttggtgacattggccaaccacaatatcacatgtg 169  Q
    ||||||||||| || ||||||||||||||||||| |||||||||    
T  7212042 gacattgtggtgggagacattggccaaccacaatgtcacatgtg 7211999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 29681863 - 29681906
Alignment:
Q  214 cacacttataacattgtggttggtaatatcaccaatatcaccaa 257  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||    
T  29681863 cacacttgtaacattgtggttggtaatgtcaccaatgtcaccaa 29681906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 25099408 - 25099354
Alignment:
Q  112 gggtagcacttga-tgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    ||||||||||||| ||| ||||||||||||||| |||| |||||||||| |||||    
T  25099408 gggtagcacttgagtgaaattgtggttggtgactttggtcaaccacaatgtcaca 25099354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 35418307 - 35418277
Alignment:
Q  135 gttggtgacattggccaaccacaatatcaca 165  Q
    |||||||||||||||||||||||||||||||    
T  35418307 gttggtgacattggccaaccacaatatcaca 35418277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 29681900 - 29681940
Alignment:
Q  242 tcaccaatatcaccaaccacaatgtcactcaaatattatcc 282  Q
    |||||||| ||||||||||||||||||| ||| ||||||||    
T  29681900 tcaccaatgtcaccaaccacaatgtcacccaagtattatcc 29681940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 9178004 - 9177946
Alignment:
Q  112 gggtagcacttg-atgacattgtggttggtgacattggccaaccacaatatcacatgtg 169  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  9178004 gggtagcacttggatgacattgtggttggtgatattggccaaccacaatatcacatgtg 9177946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 5215627 - 5215560
Alignment:
Q  215 acacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 282  Q
    |||||| ||||||||||||||||||| |||||||| | ||||||||||||||||| ||| ||||||||    
T  5215627 acacttgtaacattgtggttggtaatgtcaccaatgttaccaaccacaatgtcacccaagtattatcc 5215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 5215715 - 5215670
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcacatgtgg 170  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||    
T  5215715 tgacattgtggttgatgacattggtcaaccacaatatcacatgtgg 5215670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 19417552 - 19417595
Alignment:
Q  223 aacattgtggttggtaatatcaccaatatcaccaaccacaatgt 266  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  19417552 aacattgtggttggtaatgtcaccaatgtcaccaaccacaatgt 19417595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 25879452 - 25879406
Alignment:
Q  123 gatgacattgtggttggtgacattggccaaccacaatatcacatgtg 169  Q
    |||||||||||||||||||| ||| |||||||||||| |||||||||    
T  25879452 gatgacattgtggttggtgatattagccaaccacaatgtcacatgtg 25879406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 41288004 - 41288041
Alignment:
Q  245 ccaatatcaccaaccacaatgtcactcaaatattatcc 282  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  41288004 ccaatatcaccaaccacaatgtcacccaaatattatcc 41288041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 12605700 - 12605660
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  12605700 tgacattgtggttggtgacattggtcaaccacaatgtcaca 12605660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 22097544 - 22097488
Alignment:
Q  110 tcgggtagcacttga-tgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||| ||||| |||||    
T  22097544 tcgggtagcacttgaatgacattgtagttggtgacattggtcaactacaatgtcaca 22097488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 36568804 - 36568871
Alignment:
Q  215 acacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 282  Q
    |||||| |||||||||||||| | || |||| ||| |||||||||||||||||||  || ||||||||    
T  36568804 acacttgtaacattgtggttgattatgtcactaatgtcaccaaccacaatgtcacataagtattatcc 36568871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 23219427 - 23219393
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaat 159  Q
    ||||||||||||||||||| |||||||||||||||    
T  23219427 tgacattgtggttggtgaccttggccaaccacaat 23219393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 29385345 - 29385303
Alignment:
Q  213 gcacacttataacattgtggttggtaatatcaccaatatcacc 255  Q
    |||||||| |||||||||||||||||||||||| ||| |||||    
T  29385345 gcacacttgtaacattgtggttggtaatatcactaatgtcacc 29385303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 29385419 - 29385385
Alignment:
Q  136 ttggtgacattggccaaccacaatatcacatgtgg 170  Q
    |||||||||||||||||||||||| ||||||||||    
T  29385419 ttggtgacattggccaaccacaatgtcacatgtgg 29385385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 42772108 - 42772070
Alignment:
Q  127 acattgtggttggtgacattggccaaccacaatatcaca 165  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  42772108 acattgtggttggtgacattgaccaaccacaatgtcaca 42772070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 29385456 - 29385416
Alignment:
Q  109 gtcgggtagcacttga-tgacattgtggttggtgacattgg 148  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  29385456 gtcgggtagcacttgggtgacattgtggttggtgacattgg 29385416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 46321444 - 46321494
Alignment:
Q  224 acattgtggttggt-aatatcaccaatatcaccaaccacaatgtcactcaa 273  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  46321444 acattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaa 46321494  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 6608451 - 6608500
Alignment:
Q  217 acttataacattgtggttggtaatatcaccaatatcaccaaccacaatgt 266  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||||    
T  6608451 acttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgt 6608500  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 30023703 - 30023650
Alignment:
Q  112 gggtagcacttgatgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    |||||||||| | ||||||||||||||||||||||| ||||||||||| |||||    
T  30023703 gggtagcactgggtgacattgtggttggtgacattgaccaaccacaatgtcaca 30023650  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 31846851 - 31846782
Alignment:
Q  213 gcacacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 282  Q
    |||||||| ||||||| ||||||||||| |||| ||| |||||||||| |||||||| ||| ||||||||    
T  31846851 gcacacttgtaacattttggttggtaatgtcacgaatgtcaccaaccataatgtcacccaagtattatcc 31846782  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 38324977 - 38324932
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcacatgtgg 170  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||    
T  38324977 tgacattgtggttggtgatattggccaaccataatatcacatgtgg 38324932  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 53261103 - 53261147
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcacatgtg 169  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||    
T  53261103 tgacattgtggttggtgacattgaccaaccacaatgtcacatgtg 53261147  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 2254632 - 2254686
Alignment:
Q  215 acacttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcac 269  Q
    |||||| |||||||||| |||||||||||| |||| |||| ||||||||||||||    
T  2254632 acacttgtaacattgtgattggtaatatcatcaatgtcacgaaccacaatgtcac 2254686  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 54223564 - 54223606
Alignment:
Q  123 gatgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    ||||||||||||||||||||||||| ||||||||||| |||||    
T  54223564 gatgacattgtggttggtgacattgaccaaccacaatgtcaca 54223606  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 31012229 - 31012294
Alignment:
Q  217 acttataacattgtggttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcc 282  Q
    |||| ||| ||||||||||||||| |||| ||| |||||||||||||||||||  || ||||||||    
T  31012229 acttgtaatattgtggttggtaatgtcactaatgtcaccaaccacaatgtcacctaagtattatcc 31012294  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 32008336 - 32008391
Alignment:
Q  215 acacttataacattgtggttggt-aatatcaccaatatcaccaaccacaatgtcac 269  Q
    |||||| ||||||| |||||||| |||||||| ||| |||||||||||||||||||    
T  32008336 acacttgtaacattttggttggtcaatatcactaatgtcaccaaccacaatgtcac 32008391  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 31012176 - 31012130
Alignment:
Q  224 acattgtggttggt-aatatcaccaatatcaccaaccacaatgtcac 269  Q
    |||||||||||||| ||| |||||| |||||||||||||||||||||    
T  31012176 acattgtggttggtcaatgtcaccattatcaccaaccacaatgtcac 31012130  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 31846900 - 31846946
Alignment:
Q  224 acattgtggttggt-aatatcaccaatatcaccaaccacaatgtcac 269  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||    
T  31846900 acattgtggttggccaatatcaccaatgtcaccaaccacaatgtcac 31846946  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 33380614 - 33380650
Alignment:
Q  123 gatgacattgtggttggtgacattggccaaccacaat 159  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  33380614 gatgacattgtggttggtgatattggtcaaccacaat 33380650  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 36273102 - 36273062
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    |||||||||||| ||||| |||| |||||||||||||||||    
T  36273102 tgacattgtggtcggtgatattgaccaaccacaatatcaca 36273062  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 45051383 - 45051339
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcacatgtg 169  Q
    |||||||||||||||||||||||||| |||||||| |||||||||    
T  45051383 tgacattgtggttggtgacattggccgaccacaatgtcacatgtg 45051339  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 16687571 - 16687510
Alignment:
Q  224 acattgtggttgg-taatatcaccaatatcaccaaccacaatgtcactcaaatattatccca 284  Q
    ||||||||||| | |||| |||||||||||||||||||||||||||  ||| ||||||||||    
T  16687571 acattgtggttagctaatgtcaccaatatcaccaaccacaatgtcatccaagtattatccca 16687510  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 43465184 - 43465259
Alignment:
Q  213 gcacacttataacattgtgg---ttggtaatatcaccaatatcaccaaccacaatgtcactcaaatattatcccat 285  Q
    |||||||| |||||||||||   |||||||| |||||||| |||||||||| |||||||  ||| |||||||||||    
T  43465184 gcacacttgtaacattgtggtggttggtaatttcaccaatgtcaccaaccagaatgtcatccaagtattatcccat 43465259  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 33763471 - 33763507
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatat 161  Q
    |||||||||||||||||||||||| ||||||||||||    
T  33763471 tgacattgtggttggtgacattggtcaaccacaatat 33763507  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 43465112 - 43465144
Alignment:
Q  138 ggtgacattggccaaccacaatatcacatgtgg 170  Q
    |||||||||||||||||||||||||||||||||    
T  43465112 ggtgacattggccaaccacaatatcacatgtgg 43465144  T

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Target: scaffold1315 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 1826 - 1866
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  1826 tgacattgtggttggtgacattgatcaaccacaatatcaca 1866  T

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Target: scaffold1293 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 245 - 205
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  245 tgacattgtggttggtgacattgatcaaccacaatatcaca 205  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 26513 - 26553
Alignment:
Q  125 tgacattgtggttggtgacattggccaaccacaatatcaca 165  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  26513 tgacattgtggttggtgacattggtcaaacacaatatcaca 26553  T

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