View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_62 (Length: 405)
Name: NF0856_low_62
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 107 - 319
Target Start/End: Original strand, 35379019 - 35379231
Alignment:
| Q |
107 |
gatcaaatgttgttcactgcactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaatagatggtgtgattctta |
206 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35379019 |
gatcaaatgttgttcactgtactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaatagatggtgtgattctta |
35379118 |
T |
|
| Q |
207 |
cagcaatattgcatgctggaccagtggaatttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatca |
306 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35379119 |
cagcaatattgcatgctggaccagtcgagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcaccatca |
35379218 |
T |
|
| Q |
307 |
ttcttcaattgtc |
319 |
Q |
| |
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||||||||||||| |
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|
| T |
35379219 |
ttcttcaattgtc |
35379231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 107 - 318
Target Start/End: Original strand, 35354515 - 35354726
Alignment:
| Q |
107 |
gatcaaatgttgttcactgcactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaatagatggtgtgattctta |
206 |
Q |
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|||||||| |||||||||||||| ||||||| ||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354515 |
gatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatggcttctaacttaccatggtggagaatagatggtgtgattctta |
35354614 |
T |
|
| Q |
207 |
cagcaatattgcatgctggaccagtggaatttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatca |
306 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
35354615 |
cagcaatattgcatgctggaccagtggagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcactctcatcacca |
35354714 |
T |
|
| Q |
307 |
ttcttcaattgt |
318 |
Q |
| |
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|||||||||||| |
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| T |
35354715 |
ttcttcaattgt |
35354726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 110 - 319
Target Start/End: Original strand, 35369663 - 35369872
Alignment:
| Q |
110 |
caaatgttgttcactgcactcgtatattgtatagcatactttatatttcctatggcttctaacttaccatggtggagaatagatggtgtgattcttacag |
209 |
Q |
| |
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||||| |||||||||||||| |||| | |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35369663 |
caaattttgttcactgcactgttatactacataggatacatgatatttcctatggcttctaacttaccatggtggagaatagatggtgtgattcttacag |
35369762 |
T |
|
| Q |
210 |
caatattgcatgctggaccagtggaatttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatcattc |
309 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35369763 |
caatattgcatgctggaccagtcgagtttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcaccatcattc |
35369862 |
T |
|
| Q |
310 |
ttcaattgtc |
319 |
Q |
| |
|
|||||||||| |
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| T |
35369863 |
ttcaattgtc |
35369872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 19630671 - 19630504
Alignment:
| Q |
152 |
atatttcctatggcttctaacttaccatggtggagaatagatggtgtgattcttacagcaatattgcatgctggaccagtggaatttttatactattggc |
251 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| | |||||||||||||||||||| || ||||||||||||| |
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| T |
19630671 |
atatttcctatggctgctaacttaccatggtggagaacagatggtgtggttcttacagctctcttgcatgctggaccagtggagttcttatactattggc |
19630572 |
T |
|
| Q |
252 |
ttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatcattcttcaattgtc |
319 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19630571 |
tacatagagcacttcatcatcattatctatactctcgttaccattctcatcatcattcttcaattgtc |
19630504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 19684126 - 19684293
Alignment:
| Q |
152 |
atatttcctatggcttctaacttaccatggtggagaatagatggtgtgattcttacagcaatattgcatgctggaccagtggaatttttatactattggc |
251 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||| || ||||||||||||| |
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| T |
19684126 |
atatttcctatggctgccaacttaccatggtggagaacagatggtgtgattcttacagctatcttgcatgctggaccagtggagttcttatactattggc |
19684225 |
T |
|
| Q |
252 |
ttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatcattcttcaattgtc |
319 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| |
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|
| T |
19684226 |
tacatagagcacttcatcatcattatctatattctcgttaccattctcaccatcattcttcaattgtc |
19684293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 318
Target Start/End: Complemental strand, 2258558 - 2258463
Alignment:
| Q |
223 |
tggaccagtggaatttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatcattcttcaattgt |
318 |
Q |
| |
|
|||||||||||| ||| | ||||||||| | || ||||||||||||||||||| || || ||| | ||||||||||||||||||||||| ||||| |
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| T |
2258558 |
tggaccagtggagtttctttactattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattgt |
2258463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 318
Target Start/End: Complemental strand, 2280553 - 2280453
Alignment:
| Q |
218 |
catgctggaccagtggaatttttatactattggcttcatagagcacttcatcatcattatctatactctcgttatcattctcatcatcattcttcaattg |
317 |
Q |
| |
|
||||||||| |||| |||||| | || |||||| | || ||||||||||||||||||| || || ||| | ||||||||||||||||||||||| |||| |
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| T |
2280553 |
catgctggagcagttgaatttctttattattggttacacagagcacttcatcatcatttcctctattctagatatcattctcatcatcattcttccattg |
2280454 |
T |
|
| Q |
318 |
t |
318 |
Q |
| |
|
| |
|
|
| T |
2280453 |
t |
2280453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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