View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_69 (Length: 387)

Name: NF0856_low_69
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_69
NF0856_low_69
[»] chr5 (9 HSPs)
chr5 (1-387)||(9912319-9912720)
chr5 (317-369)||(15415891-15415943)
chr5 (4-61)||(21352384-21352441)
chr5 (4-98)||(15415545-15415639)
chr5 (219-275)||(15415784-15415839)
chr5 (329-377)||(17508080-17508128)
chr5 (33-118)||(23978006-23978093)
chr5 (329-377)||(41856599-41856647)
chr5 (329-377)||(42022992-42023040)
[»] scaffold0060 (1 HSPs)
scaffold0060 (4-110)||(48561-48666)
[»] chr4 (8 HSPs)
chr4 (12-106)||(16953010-16953104)
chr4 (12-92)||(41816166-41816246)
chr4 (329-377)||(8982325-8982373)
chr4 (329-377)||(13698517-13698565)
chr4 (329-377)||(21301873-21301921)
chr4 (329-377)||(36357320-36357368)
chr4 (329-377)||(40002248-40002296)
chr4 (329-377)||(54346382-54346430)
[»] chr3 (9 HSPs)
chr3 (6-118)||(12113734-12113846)
chr3 (315-377)||(12114023-12114085)
chr3 (244-297)||(12113943-12113995)
chr3 (12-93)||(27606319-27606400)
chr3 (329-377)||(3478987-3479035)
chr3 (329-377)||(15765059-15765107)
chr3 (329-377)||(17362084-17362132)
chr3 (329-377)||(17366726-17366774)
chr3 (329-377)||(20092690-20092738)
[»] chr2 (4 HSPs)
chr2 (6-97)||(15444725-15444816)
chr2 (4-114)||(27415759-27415869)
chr2 (329-377)||(42725488-42725536)
chr2 (329-377)||(44756640-44756688)
[»] chr8 (3 HSPs)
chr8 (38-110)||(8319201-8319273)
chr8 (329-377)||(21646122-21646170)
chr8 (329-377)||(32013705-32013753)
[»] chr7 (3 HSPs)
chr7 (318-368)||(44783724-44783773)
chr7 (329-377)||(33241182-33241230)
chr7 (329-377)||(47996979-47997027)
[»] scaffold0517 (1 HSPs)
scaffold0517 (329-377)||(1570-1618)
[»] scaffold0166 (1 HSPs)
scaffold0166 (329-377)||(15781-15829)
[»] scaffold0165 (1 HSPs)
scaffold0165 (329-377)||(14992-15040)
[»] scaffold0014 (1 HSPs)
scaffold0014 (329-377)||(29552-29600)
[»] chr6 (1 HSPs)
chr6 (329-377)||(22700286-22700334)
[»] chr1 (2 HSPs)
chr1 (329-377)||(27714450-27714498)
chr1 (329-377)||(37406456-37406504)


Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 9912720 - 9912319
Alignment:
Q  1 atactatgttcaaaacatatgttactgttgaaaataagaaagtgttgttggaataatcttacaccactaatgtcgttgacattagagatatgaagttgct 100  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9912720 atactatgtttaaaacatatattactgttgaaaataagaaagtgttgtttgaataatcttacaccactaatgtcgttgacattagagatatgaagttgct 9912621  T
Q  101 attcacatccaaaaagaatatgcttcaaagataataaaggatctgtatttcagattatgttgaagaagattgagttaactcgtacttaaagatagacttg 200  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9912620 attcacgtccaaaaagaatatgcttcaaagataataaatgatctgtatttcagattatgttgaagaagactgagttaactcgtacttaaagatagacttg 9912521  T
Q  201 tgcgtcatatattcttcatggaaaatatgacaccacttaaggaattgaaaaattatttcaataagaaaatcaataacctggtggtgatagaagcacacaa 300  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9912520 tgcgtcatatattatttatggaaaatatgacaccacttaaggaattgaaaaattatttcaataagaaaatcaataaccttgtggtgatagaagcacacaa 9912421  T
Q  301 tattatccccacat---------------tttagagtacaaacttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagctgacttac 385  Q
    ||| ||||||||||               |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9912420 tataatccccacattttcaatgagttttatttagagtacaaacttattcatgaaacaactacatcttattatcctgaaatgaacggtaaagctgacttac 9912321  T
Q  386 cg 387  Q
    ||    
T  9912320 cg 9912319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 15415891 - 15415943
Alignment:
Q  317 tagagtacaaacttattcatcaaacaactacatcttattatcctgaaatgaac 369  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  15415891 tagagtacaaatttattcatgaaacaactacatcttattatcctgaaatgaac 15415943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 21352384 - 21352441
Alignment:
Q  4 ctatgttcaaaacatatgttactgttgaaaataagaaagtgttgttggaataatctta 61  Q
    ||||||||| ||||||||||| | |||||||||| ||||||||||| ||||| |||||    
T  21352384 ctatgttcataacatatgttattattgaaaataataaagtgttgttagaatattctta 21352441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 15415545 - 15415639
Alignment:
Q  4 ctatgttcaaaacatatgttactgttgaaaataagaaagtgttgttggaataatcttacaccactaatgtcgttgacattagagatatgaagttg 98  Q
    ||||||||||||||||||  |||  | ||||||| ||||| ||||  ||||| | | |||||| ||| |||||| ||||| ||||||||||||||    
T  15415545 ctatgttcaaaacatatgccactactaaaaataaaaaagtattgtcagaatattataacaccattaaagtcgttaacattggagatatgaagttg 15415639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 15415784 - 15415839
Alignment:
Q  219 tggaaaatatgacaccacttaaggaattgaaaaattatttcaataagaaaatcaata 275  Q
    ||||||||| || |||||| | ||||||||||| | |||||||||||||||||||||    
T  15415784 tggaaaatacgataccactaatggaattgaaaa-tcatttcaataagaaaatcaata 15415839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 17508128 - 17508080
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  17508128 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 17508080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 23978006 - 23978093
Alignment:
Q  33 aataagaaagtgttgttggaataatcttacacca--ctaatgtcgttgacattagagatatgaagttgctattcacatccaaaaagaa 118  Q
    ||||||||||||||||| ||||  |||| |||||  |||| || |||| |||| | ||||||||||||| |||||| ||| |||||||    
T  23978006 aataagaaagtgttgttagaatcttcttgcaccaaactaaagtagttggcattggggatatgaagttgcaattcacgtccgaaaagaa 23978093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 41856647 - 41856599
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  41856647 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 41856599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 42023040 - 42022992
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  42023040 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 42022992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 48561 - 48666
Alignment:
Q  4 ctatgttcaaaacatatgttactgttgaaaataagaaagtgttgttggaataatcttacaccactaatgtcgttgacattagagatatgaagttgctatt 103  Q
    |||||||||||||||||| |||||  |||||||||||||||||||| ||||  ||||||||||||||  | |||| |||| ||||||||||||||| | |    
T  48561 ctatgttcaaaacatatgatactgccgaaaataagaaagtgttgttagaatcttcttacaccactaa-atagttggcattcgagatatgaagttgcaact 48659  T
Q  104 cacatcc 110  Q
    |||||||    
T  48660 cacatcc 48666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 16953104 - 16953010
Alignment:
Q  12 aaaacatatgttactgttgaaaataagaaagtgttgttggaataatcttacaccactaatgtcgttgacattagagatatgaagttgctattcac 106  Q
    |||||||||| ||||| | ||||||||||||||||||| ||||| ||||||| |||||| |||||||  ||| ||||||||||||||| ||||||    
T  16953104 aaaacatatgctactgctaaaaataagaaagtgttgttagaatattcttacatcactaaagtcgttggtatttgagatatgaagttgcaattcac 16953010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 41816246 - 41816166
Alignment:
Q  12 aaaacatatgttactgttgaaaataagaaagtgttgttggaataatcttacaccactaatgtcgttgacattagagatatg 92  Q
    ||||||||||||| || ||| ||||||||||||||||| ||||  |||||||||||||| || |||| |||| ||||||||    
T  41816246 aaaacatatgttattgctgagaataagaaagtgttgttagaatcttcttacaccactaaagtagttggcattggagatatg 41816166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 8982325 - 8982373
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  8982325 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 8982373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 13698565 - 13698517
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  13698565 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 13698517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 21301873 - 21301921
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  21301873 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 21301921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 36357368 - 36357320
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  36357368 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 36357320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 40002296 - 40002248
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  40002296 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 40002248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 54346430 - 54346382
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  54346430 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 54346382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 118
Target Start/End: Original strand, 12113734 - 12113846
Alignment:
Q  6 atgttcaaaacatatgttactgttgaaaataagaaagtgttgttggaataatcttacaccactaatgtcgttgacattagagatatgaagttgctattca 105  Q
    |||||||||||||||| ||||| ||| ||||||||| |||||||  |||| | | ||| || ||| ||| |||||||| ||||||||||||||  |||||    
T  12113734 atgttcaaaacatatgctactgctgagaataagaaaatgttgttataatattataacatcattaaggtcattgacattggagatatgaagttgtaattca 12113833  T
Q  106 catccaaaaagaa 118  Q
    ||||| |||||||    
T  12113834 catccgaaaagaa 12113846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 377
Target Start/End: Original strand, 12114023 - 12114085
Alignment:
Q  315 tttagagtacaaacttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||| |||||| | |||||||| |||||| | |||||||||||||||||||||||||||||||    
T  12114023 tttatagtacacatttattcatgaaacaaatgcatcttattatcctgaaatgaacggtaaagc 12114085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 12113943 - 12113995
Alignment:
Q  244 attgaaaaattatttcaataagaaaatcaataacctggtggtgatagaagcaca 297  Q
    ||||||||||||||| |||||||||| |||||| || |||||||||||||||||    
T  12113943 attgaaaaattattt-aataagaaaaacaataatctcgtggtgatagaagcaca 12113995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 27606400 - 27606319
Alignment:
Q  12 aaaacatatgttactgttgaaaataagaaagtgttgttggaataatcttacaccactaatgtcgttgacattagagatatga 93  Q
    |||| ||||||| ||| |||||||||||||||||| ||  |||| | | |||||| ||| ||||||| |||| |||||||||    
T  27606400 aaaatatatgttgctgctgaaaataagaaagtgttcttataatattataacaccattaaagtcgttggcattggagatatga 27606319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 3478987 - 3479035
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  3478987 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 3479035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 15765059 - 15765107
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  15765059 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 15765107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 17362132 - 17362084
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  17362132 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 17362084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 17366774 - 17366726
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  17366774 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 17366726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 20092690 - 20092738
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  20092690 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 20092738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 15444725 - 15444816
Alignment:
Q  6 atgttcaaaacatatgttactgttgaaaataagaaagtgttgttggaataatcttacaccactaatgtcgttgacattagagatatgaagtt 97  Q
    |||||||||||||||| |||| ||||||||||||||||||||||  |||| ||||||| || ||| || |||| |||| |||||||| ||||    
T  15444725 atgttcaaaacatatgctacttttgaaaataagaaagtgttgttataatattcttacatcattaaagtagttggcattggagatatggagtt 15444816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 27415759 - 27415869
Alignment:
Q  4 ctatgttcaaaacatatgttactgttgaaaataagaaagtgttgttggaataatcttacaccactaatgtcgttgacattagagatatgaagttgctatt 103  Q
    |||||||||||||||| | |||   |||||||| |||||| ||||| ||||| ||||| || ||||| ||||||| |||| ||||||| ||||||  |||    
T  27415759 ctatgttcaaaacataggctacaactgaaaataggaaagtcttgttagaatattcttaaacaactaaagtcgttggcatttgagatataaagttggaatt 27415858  T
Q  104 cacatccaaaa 114  Q
    ||| |||||||    
T  27415859 cacgtccaaaa 27415869  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 42725488 - 42725536
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  42725488 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 42725536  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 44756640 - 44756688
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  44756640 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 44756688  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 8319201 - 8319273
Alignment:
Q  38 gaaagtgttgttggaataatcttacaccactaatgtcgttgacattagagatatgaagttgctattcacatcc 110  Q
    |||||||||||| ||||  |||||||||||||| || | ||||||| ||||||||||||||| ||||||||||    
T  8319201 gaaagtgttgttagaatcttcttacaccactaaagtagctgacattggagatatgaagttgcaattcacatcc 8319273  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 21646122 - 21646170
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  21646122 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 21646170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 32013753 - 32013705
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  32013753 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 32013705  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 44783773 - 44783724
Alignment:
Q  318 agagtacaaacttattcatcaaacaactacatcttattatcctgaaatgaa 368  Q
    |||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  44783773 agagtacaaa-ttattcatgaaacaactacatcttattatcatgaaatgaa 44783724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 33241230 - 33241182
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  33241230 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 33241182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 47997027 - 47996979
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  47997027 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 47996979  T

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Target: scaffold0517 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 1618 - 1570
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  1618 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 1570  T

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Target: scaffold0166 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 15781 - 15829
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  15781 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 15829  T

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Target: scaffold0165 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 15040 - 14992
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  15040 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 14992  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 29600 - 29552
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  29600 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 29552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 22700286 - 22700334
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  22700286 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 22700334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 27714498 - 27714450
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  27714498 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 27714450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 37406456 - 37406504
Alignment:
Q  329 ttattcatcaaacaactacatcttattatcctgaaatgaacggtaaagc 377  Q
    |||||||| |||||||| |  |||||| |||||||||||||||||||||    
T  37406456 ttattcatgaaacaactgctccttattctcctgaaatgaacggtaaagc 37406504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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