View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_74 (Length: 384)

Name: NF0856_low_74
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_74
NF0856_low_74
[»] chr5 (14 HSPs)
chr5 (294-370)||(21069291-21069367)
chr5 (290-370)||(16978990-16979070)
chr5 (285-367)||(28591162-28591244)
chr5 (289-370)||(2466819-2466900)
chr5 (289-374)||(9538090-9538175)
chr5 (289-370)||(18400187-18400268)
chr5 (294-369)||(19182952-19183027)
chr5 (284-362)||(13651173-13651250)
chr5 (288-333)||(31947119-31947164)
chr5 (294-374)||(16611730-16611810)
chr5 (294-374)||(25590433-25590512)
chr5 (289-370)||(2464666-2464747)
chr5 (283-371)||(27720947-27721035)
chr5 (294-370)||(8074453-8074529)
[»] chr7 (19 HSPs)
chr7 (293-374)||(34704910-34704991)
chr7 (285-374)||(10899114-10899203)
chr7 (289-364)||(2677837-2677912)
chr7 (294-374)||(7258277-7258357)
chr7 (294-370)||(42477383-42477459)
chr7 (294-374)||(44333141-44333221)
chr7 (290-370)||(48646047-48646127)
chr7 (294-372)||(8048827-8048905)
chr7 (294-374)||(46286505-46286585)
chr7 (313-374)||(35727720-35727781)
chr7 (289-370)||(43457454-43457535)
chr7 (294-362)||(21062819-21062887)
chr7 (330-374)||(30925049-30925093)
chr7 (308-360)||(36847217-36847269)
chr7 (304-374)||(8374926-8374996)
chr7 (296-370)||(39708107-39708181)
chr7 (344-373)||(48647485-48647514)
chr7 (294-367)||(48777258-48777331)
chr7 (294-374)||(48788713-48788793)
[»] chr3 (21 HSPs)
chr3 (289-370)||(17700515-17700596)
chr3 (289-364)||(20464512-20464587)
chr3 (294-370)||(52318362-52318438)
chr3 (289-374)||(34263802-34263887)
chr3 (294-374)||(2591629-2591709)
chr3 (294-374)||(48572987-48573067)
chr3 (290-370)||(17701964-17702044)
chr3 (294-370)||(19115191-19115267)
chr3 (285-369)||(55388066-55388150)
chr3 (313-367)||(19331129-19331183)
chr3 (289-371)||(52316976-52317058)
chr3 (294-370)||(2592052-2592128)
chr3 (294-370)||(33428480-33428556)
chr3 (294-374)||(36278954-36279034)
chr3 (296-371)||(3671043-3671117)
chr3 (285-364)||(49261585-49261664)
chr3 (344-374)||(11773092-11773122)
chr3 (300-370)||(19114541-19114611)
chr3 (294-364)||(47075402-47075472)
chr3 (301-370)||(20464078-20464147)
chr3 (294-370)||(55389514-55389590)
[»] chr2 (18 HSPs)
chr2 (295-371)||(34037717-34037793)
chr2 (290-374)||(2910098-2910182)
chr2 (294-370)||(31091572-31091648)
chr2 (290-370)||(32764936-32765016)
chr2 (294-370)||(32766284-32766360)
chr2 (289-364)||(38854786-38854861)
chr2 (288-374)||(17330271-17330357)
chr2 (291-364)||(34582721-34582794)
chr2 (294-371)||(39015007-39015084)
chr2 (294-370)||(5915037-5915113)
chr2 (294-374)||(31090166-31090246)
chr2 (294-370)||(39016424-39016502)
chr2 (285-374)||(24459487-24459576)
chr2 (291-364)||(31443295-31443368)
chr2 (294-374)||(7073641-7073721)
chr2 (300-364)||(33163510-33163574)
chr2 (294-373)||(40000376-40000455)
chr2 (329-374)||(8420962-8421007)
[»] chr1 (20 HSPs)
chr1 (294-373)||(22856682-22856761)
chr1 (289-370)||(10332983-10333064)
chr1 (287-371)||(32665814-32665898)
chr1 (288-374)||(5782410-5782496)
chr1 (294-374)||(6612421-6612501)
chr1 (289-360)||(44719347-44719418)
chr1 (313-374)||(7945595-7945656)
chr1 (287-360)||(8975154-8975227)
chr1 (294-374)||(10333227-10333307)
chr1 (288-360)||(18897945-18898017)
chr1 (289-373)||(52439476-52439560)
chr1 (344-374)||(6614020-6614050)
chr1 (344-374)||(9341066-9341096)
chr1 (293-338)||(1407641-1407686)
chr1 (289-374)||(3117646-3117731)
chr1 (294-367)||(9339648-9339721)
chr1 (325-370)||(39977365-39977410)
chr1 (302-374)||(1001164-1001236)
chr1 (304-364)||(21619652-21619712)
chr1 (290-374)||(50107244-50107328)
[»] chr8 (14 HSPs)
chr8 (285-371)||(1953014-1953099)
chr8 (282-370)||(41753988-41754076)
chr8 (289-369)||(41754841-41754920)
chr8 (288-364)||(8569404-8569480)
chr8 (294-370)||(10407629-10407705)
chr8 (294-370)||(32898490-32898566)
chr8 (313-364)||(28005364-28005415)
chr8 (313-364)||(28062667-28062718)
chr8 (289-364)||(31075340-31075415)
chr8 (293-371)||(5965486-5965564)
chr8 (286-364)||(31073988-31074066)
chr8 (285-362)||(39138716-39138792)
chr8 (296-364)||(9625194-9625262)
chr8 (289-369)||(30134563-30134643)
[»] chr6 (9 HSPs)
chr6 (289-373)||(12676512-12676596)
chr6 (294-374)||(30748001-30748081)
chr6 (294-369)||(31218957-31219032)
chr6 (290-374)||(6468822-6468906)
chr6 (286-365)||(5265193-5265272)
chr6 (322-369)||(10855837-10855884)
chr6 (294-369)||(31219206-31219281)
chr6 (288-357)||(12676170-12676239)
chr6 (285-338)||(24940394-24940447)
[»] chr4 (13 HSPs)
chr4 (294-369)||(42278051-42278126)
chr4 (290-370)||(47874562-47874642)
chr4 (295-374)||(26172983-26173062)
chr4 (282-369)||(39868912-39868999)
chr4 (288-370)||(31844718-31844800)
chr4 (294-364)||(53771100-53771170)
chr4 (294-374)||(19051272-19051352)
chr4 (290-370)||(42391933-42392013)
chr4 (294-364)||(31845006-31845076)
chr4 (315-369)||(54574448-54574502)
chr4 (294-363)||(11269892-11269961)
chr4 (285-370)||(47878529-47878614)
chr4 (289-369)||(26170637-26170717)
[»] scaffold0016 (1 HSPs)
scaffold0016 (290-364)||(36574-36647)
[»] scaffold0767 (1 HSPs)
scaffold0767 (294-370)||(5601-5677)
[»] scaffold0039 (1 HSPs)
scaffold0039 (294-370)||(79075-79151)
[»] scaffold0034 (1 HSPs)
scaffold0034 (294-370)||(116057-116133)


Alignment Details
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 21069291 - 21069367
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||||||||||||||||| ||||||||||||| ||||||||| || ||| |||||||||||||||||||||||||||    
T  21069291 aaatagtcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtc 21069367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 370
Target Start/End: Original strand, 16978990 - 16979070
Alignment:
Q  290 gagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||| ||||||||||||||| |||||| ||||||||| || ||||||| || ||||||||| ||||||| ||||||||||    
T  16978990 gagtagatagtcactttagtccttgactttgcaccttgctgccacaaaggtcattgactcagaattaaatgcaaataagtc 16979070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 28591244 - 28591162
Alignment:
Q  285 aaaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataa 367  Q
    |||||||| |||||||||||||  ||  ||||||||||||| | ||||||| || ||  ||||||||||||||||||||||||    
T  28591244 aaaaagagcaaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataa 28591162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 370
Target Start/End: Complemental strand, 2466900 - 2466819
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||| ||||||||||||| |||| ||||||||||||| | | ||||| || || |||| ||||||||||||| |||||||||    
T  2466900 agagcaaatagtcactttggtctctgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtc 2466819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 374
Target Start/End: Complemental strand, 9538175 - 9538090
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||| ||||||||||||| |||  |||||||||| || ||||||| | || ||  ||||||||||||||||||||| |||||||||    
T  9538175 agagcaaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctg 9538090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 18400187 - 18400268
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||||||| ||||||||||||  |||||||||||||   ||||||| || || |||||||||||||||||| ||| |||||    
T  18400187 agagtaaatggtcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtc 18400268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 19182952 - 19183027
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagt 369  Q
    ||||||| |||||||   |||||| ||||||| | ||||||| || ||| ||||||||||||||||||||||||||    
T  19182952 aaatagttactttagaacttgactttgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagt 19183027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 13651250 - 13651173
Alignment:
Q  284 taaaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaataca 362  Q
    ||||| ||| ||||||||||||||||| |||||| |||||| || ||||||| || ||  |||||||||||||||||||    
T  13651250 taaaatgagcaaatagtcactttagtccttgactgtgcacc-tgctgtcacataggtccctgactcaggattaaataca 13651173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 31947164 - 31947119
Alignment:
Q  288 aagagtaaatagtcactttagtctttgactctgcaccttgttgtca 333  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||    
T  31947164 aagagtaaatagtcactttagtctctgattctgcactttgttgtca 31947119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 16611730 - 16611810
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||| ||||||||| |  |||||||| ||||| | ||||||| || ||| ||||||||||||||||||||| ||| |||||    
T  16611730 aaatggtcactttaattcttgactctacacctcgctgtcacataggtctctgactcaggattaaatacaaagaagcctctg 16611810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 25590433 - 25590512
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||||||||||||  | | ||||||||||||| | ||||||| || ||  |||||| ||||||||||||||||||||||||    
T  25590433 aaatagtcactttgttttctgactctgcacctcgctgtcacataggtccctgactc-ggattaaatacaaataagtctctg 25590512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 2464666 - 2464747
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||| |||||||||||||||||  ||| |||||| || | ||||| | || ||  ||||||| |||||||||||||||||||    
T  2464666 agagcaaatagtcactttagtcactgattctgcagctcgctgtcatataggtccatgactcatgattaaatacaaataagtc 2464747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 371
Target Start/End: Complemental strand, 27721035 - 27720947
Alignment:
Q  283 ataaaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaa-gatctttgactcaggattaaatacaaataagtct 371  Q
    |||||||||| ||| | |||||||| ||| ||||||||||||| | ||||| ||| | ||||| |||||||||| |||||||| ||||||    
T  27721035 ataaaaagagcaaacaatcactttaatctctgactctgcacctcgctgtcataaaggttcttttactcaggatt-aatacaaagaagtct 27720947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 8074453 - 8074529
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||||||||||||||||  ||| | |||| || | ||||||| |  ||  |||||||||||||||||||||||||||    
T  8074453 aaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtc 8074529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 293 - 374
Target Start/End: Original strand, 34704910 - 34704991
Alignment:
Q  293 taaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||||||||||||||||||  |||||||||||| ||||||||||||  || ||||||||||||||||||||| |||||||||    
T  34704910 taaatagtcactttagtctccgactctgcacctcgttgtcacaaaggcctctgactcaggattaaatacaaagaagtctctg 34704991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 374
Target Start/End: Complemental strand, 10899203 - 10899114
Alignment:
Q  285 aaaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||| |||||||| || ||||| |||  ||||||||||||| | ||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  10899203 aaaatgagtaaattgttactttggtccctgactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctg 10899114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 2677912 - 2677837
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    ||||||||| ||||| || ||||||||||||| |||| |||||||||||| ||| ||||||| |||||||||||||    
T  2677912 agagtaaatggtcaccttggtctttgactctgtacctcgttgtcacaaaggtctatgactcatgattaaatacaaa 2677837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 7258277 - 7258357
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    ||||||||||||| |||  ||||||| ||||| ||||||||| || ||  | |||||||||||||||||||||||||||||    
T  7258277 aaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctg 7258357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 42477383 - 42477459
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||| ||| ||| ||| |||||||||||||| |||||| || || ||| |||||||||||||||||||||||||||    
T  42477383 aaataatcaatttggtccttgactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagtc 42477459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 44333141 - 44333221
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    ||||||||||||| |||  ||||||||||||| | ||||||| || ||  ||||||| |||||||||||||||||||||||    
T  44333141 aaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctg 44333221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 370
Target Start/End: Original strand, 48646047 - 48646127
Alignment:
Q  290 gagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||||||||||||||| |||  ||||| ||||||| | ||||||| || ||  |||||||||||||||||||||||||||    
T  48646047 gagtaaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 48646127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 8048905 - 8048827
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctc 372  Q
    ||||||||||||||  || ||||||||||||| | || ||||||| ||| ||||||| ||||||||||||| |||||||    
T  8048905 aaatagtcactttaccctctgactctgcacctcgctgacacaaaggtctctgactcaagattaaatacaaagaagtctc 8048827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 46286505 - 46286585
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||||||||||||||||  ||||||| || || | ||| | |||| ||  |||||||||||||||||||||||||||||||    
T  46286505 aaatagtcactttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctg 46286585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 35727720 - 35727781
Alignment:
Q  313 tgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    ||||||||||||| | ||||||| || ||  ||||||||||||||||| |||||||||||||    
T  35727720 tgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctg 35727781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 43457454 - 43457535
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||| |||||||||||||||||  ||| |||||| || | |||| || || ||  |||||||||||||||||||||||||||    
T  43457454 agagaaaatagtcactttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtc 43457535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 362
Target Start/End: Original strand, 21062819 - 21062887
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaataca 362  Q
    |||| ||||||||||||  ||||| ||||||| | ||||| |||| || ||||||||||||||||||||    
T  21062819 aaatggtcactttagtccctgactttgcacctcgctgtcataaaggtccttgactcaggattaaataca 21062887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 30925093 - 30925049
Alignment:
Q  330 gtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||||| || || ||||||||||||||||||||||||||||||||    
T  30925093 gtcacataggtccttgactcaggattaaatacaaataagtctctg 30925049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 36847217 - 36847269
Alignment:
Q  308 gtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaata 360  Q
    |||||||||||| ||||| ||||| |||||| ||||||||||| |||||||||    
T  36847217 gtctttgactctacacctcgttgttacaaagttctttgactcaagattaaata 36847269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 8374926 - 8374996
Alignment:
Q  304 tttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||||||  ||||||||||||| | ||||||| || ||| |||||||| |||||||||||| |||| ||||    
T  8374926 tttagtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctg 8374996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 39708107 - 39708181
Alignment:
Q  296 atagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||||||||||||||| |||||||| |||| |  ||||||||| ||  ||||||| |||| |||||||| |||||    
T  39708107 atagtcactttagtctctgactctgtacctcgccgtcacaaaggtccatgactcaagattgaatacaaagaagtc 39708181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 373
Target Start/End: Complemental strand, 48647514 - 48647485
Alignment:
Q  344 tgactcaggattaaatacaaataagtctct 373  Q
    ||||||||||||||||||||||||||||||    
T  48647514 tgactcaggattaaatacaaataagtctct 48647485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 48777258 - 48777331
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataa 367  Q
    |||||||||||||||||| ||| |||||| || | ||||||| |  ||  ||||||| ||||||||||||||||    
T  48777258 aaatagtcactttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatacaaataa 48777331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 48788793 - 48788713
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||||||||||||  || |||||| ||||||| | ||||||| || ||  |||||||  |||||||| |||||||||||||    
T  48788793 aaatagtcactttgatccttgactttgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctg 48788713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 17700515 - 17700596
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||| || |   |||||||||||||||||||||||||||    
T  17700515 agagcaaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtc 17700596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 20464587 - 20464512
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||| | |||||||||  ||||||||||||    
T  20464587 agagtaaatagtcactttagtccttgactctgcaccttgctgtcacaaaggtttttgactcataattaaatacaaa 20464512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 52318438 - 52318362
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||||||||||| |||| ||||||||||| | | ||||||| |||||  |||||||||||||||||||||||||||    
T  52318438 aaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtc 52318362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 374
Target Start/End: Original strand, 34263802 - 34263887
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||| ||||||||||||| | |  ||||||||||||| | ||||||| || || |||| |||||||||||||||||||||||||||    
T  34263802 agagcaaatagtcactttggcccctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctg 34263887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 2591629 - 2591709
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||||||||||||||||  ||| |||||| |||| ||||||| || ||  ||||||||||||||||||||| |||||||||    
T  2591629 aaatagtcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatacaaacaagtctctg 2591709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 48572987 - 48573067
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    ||||||||||||| |||  ||||||||||||| ||| ||||| || ||  ||||||||||||||||||||||||| |||||    
T  48572987 aaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctg 48573067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 370
Target Start/End: Complemental strand, 17702044 - 17701964
Alignment:
Q  290 gagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||||||||||||||||||||| ||| |||||| || | ||||| | || ||  ||||||| |||||||||||||||||||    
T  17702044 gagtaaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtc 17701964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 19115267 - 19115191
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||||||||||||||   ||||||||||||| | ||||||| || || || ||||||||||||||||||| |||||    
T  19115267 aaatagtcactttagttcgtgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaagaagtc 19115191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 369
Target Start/End: Original strand, 55388066 - 55388150
Alignment:
Q  285 aaaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagt 369  Q
    |||| ||| |||||||||||||||||  ||| |||||| || | ||||| | || ||| ||||||||||||||||||||||||||    
T  55388066 aaaatgagcaaatagtcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagt 55388150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 19331129 - 19331183
Alignment:
Q  313 tgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataa 367  Q
    ||||||||||||||| ||||||| || ||  ||||||||||||||||||||||||    
T  19331129 tgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataa 19331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 371
Target Start/End: Original strand, 52316976 - 52317058
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtct 371  Q
    |||| ||||| |||||||||||| ||| |||||| || | ||||| | || ||| ||||||| ||||||||||||||||||||    
T  52316976 agagcaaataatcactttagtctctgattctgcagctcgctgtcatataggtctctgactcatgattaaatacaaataagtct 52317058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 2592128 - 2592052
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||||||||||||||||  | | |||||| || | ||||||| || ||  |||||||||||||||||||||||||||    
T  2592128 aaatagtcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 2592052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 33428556 - 33428480
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||| |||||||| |||  ||||||||||||| ||||||||| || ||  |||||||| |||||||||||| |||||    
T  33428556 aaatggtcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtc 33428480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 36278954 - 36279034
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||||||||||||||||  ||| | | || || ||||||||| || ||  ||| |||||||||||||||||||||||||||    
T  36278954 aaatagtcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggattaaatacaaataagtctctg 36279034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 371
Target Start/End: Original strand, 3671043 - 3671117
Alignment:
Q  296 atagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtct 371  Q
    |||||||||||| || |||||| |||||||   | |||||||| ||| |||||||| |||||||||||||||||||    
T  3671043 atagtcacttta-tccttgactttgcacctctctatcacaaaggtctctgactcagaattaaatacaaataagtct 3671117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 49261664 - 49261585
Alignment:
Q  285 aaaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    |||||||| |||||||||||||||||  | | ||  ||| ||||||||||| || ||  |||||||||||||||||||||    
T  49261664 aaaaagagcaaatagtcactttagtccataattccacacattgttgtcacataggtccctgactcaggattaaatacaaa 49261585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 374
Target Start/End: Complemental strand, 11773122 - 11773092
Alignment:
Q  344 tgactcaggattaaatacaaataagtctctg 374  Q
    |||||||||||||||||||||||||||||||    
T  11773122 tgactcaggattaaatacaaataagtctctg 11773092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 370
Target Start/End: Original strand, 19114541 - 19114611
Alignment:
Q  300 tcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||||||||||  ||||||||||| | ||||||||| || ||  ||||||| ||||||||||||| |||||    
T  19114541 tcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtc 19114611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 364
Target Start/End: Complemental strand, 47075472 - 47075402
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    |||| ||||||||| || |||||||||||||| ||||||||| || ||  | ||||| |||||||||||||    
T  47075472 aaatggtcactttaatccttgactctgcacctcgttgtcacataggtccgtcactcaagattaaatacaaa 47075402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 370
Target Start/End: Original strand, 20464078 - 20464147
Alignment:
Q  301 cactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||||||||   |||||||||||| |||||||||||| ||  || |||| ||||||||||||| |||||    
T  20464078 cactttagtccccgactctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtc 20464147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 55389590 - 55389514
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||||||||||| |||  | ||||||||||| | ||||||| || || ||||||||  ||||||||||| ||||||    
T  55389590 aaatagtcactttggtccctaactctgcacctcgctgtcacataggtcattgactcaaaattaaatacaattaagtc 55389514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 295 - 371
Target Start/End: Complemental strand, 34037793 - 34037717
Alignment:
Q  295 aatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtct 371  Q
    |||||||||||||||| |||||||||||||||| ||||| |||| ||  | ||||||||||||||||||||||||||    
T  34037793 aatagtcactttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtct 34037717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 374
Target Start/End: Original strand, 2910098 - 2910182
Alignment:
Q  290 gagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    ||||||||| |||||||||||||||| | |||| || | ||||||| |||||  |||||| ||||||||||||||||||||||||    
T  2910098 gagtaaataatcactttagtctttgattttgcagctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctg 2910182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 31091648 - 31091572
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||||||||||| |||  ||||||||||||||| ||||||| || ||  |||||||||||||||||||||||||||    
T  31091648 aaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtc 31091572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 370
Target Start/End: Original strand, 32764936 - 32765016
Alignment:
Q  290 gagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||||||||||||||||||||  ||| |||||| || ||||||| | || ||| |||||||||||||||||||||||||||    
T  32764936 gagtaaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtc 32765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 32766360 - 32766284
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||||||||||| |||  ||||||||||||| ||||||||| || ||  |||||||||||||||||||||||||||    
T  32766360 aaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtc 32766284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 38854786 - 38854861
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    |||||||||||||||||| |||  ||||||| ||| | ||||||| |||| |||||||||||||||||||||||||    
T  38854786 agagtaaatagtcactttggtccctgactctacacttcgttgtcataaaggtctttgactcaggattaaatacaaa 38854861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 374
Target Start/End: Complemental strand, 17330357 - 17330271
Alignment:
Q  288 aagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    ||||| |||||||| |||||||| |||| |||||| ||   ||||||| || ||  |||||||||||||||||||||||||||||||    
T  17330357 aagagcaaatagtcgctttagtccttgattctgcagctcactgtcacataggtccctgactcaggattaaatacaaataagtctctg 17330271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 34582794 - 34582721
Alignment:
Q  291 agtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    ||||||| ||||| ||||||  ||||||||||||||| ||| |||||| || ||||||| ||||||||||||||    
T  34582794 agtaaatggtcacgttagtccctgactctgcaccttgctgttacaaaggtcattgactcgggattaaatacaaa 34582721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 39015007 - 39015084
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtct 371  Q
    ||||| ||||||| |||  ||||||||||||| | || |||| ||||| |||||||||||||||||||||||| ||||    
T  39015007 aaataatcacttttgtccctgactctgcacctcgctgccacatagatccttgactcaggattaaatacaaatacgtct 39015084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 5915113 - 5915037
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||||||||||||||||  ||||||||||||| | | ||| | || |||||||||||| |||||||||||| |||||    
T  5915113 aaatagtcactttagtccatgactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtc 5915037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 31090166 - 31090246
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    ||||||||| |||||||  ||| |||||| || | ||||||| || || |||||||||||||||||| |||||||||||||    
T  31090166 aaatagtcaatttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctg 31090246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 39016502 - 39016424
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatcttt--gactcaggattaaatacaaataagtc 370  Q
    |||||||||||||||||| ||| |||||| || | ||||||| | |||| |  ||||||||||||||||||||||||||    
T  39016502 aaatagtcactttagtctctgattctgcagctcgctgtcacatacatctctctgactcaggattaaatacaaataagtc 39016424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 374
Target Start/End: Complemental strand, 24459576 - 24459487
Alignment:
Q  285 aaaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    ||||| || ||| ||||||||| |||  |||||||||| || | ||||||| || ||  ||| |||||||||||||||||||||||||||    
T  24459576 aaaaaaagcaaagagtcactttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctg 24459487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 31443368 - 31443295
Alignment:
Q  291 agtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    ||||||| ||||||||||||| |||||||||| || |||||||||||  || |||||| |  ||||||||||||    
T  31443368 agtaaatggtcactttagtctctgactctgcatctcgttgtcacaaaagtcattgacttataattaaatacaaa 31443295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 7073641 - 7073721
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    ||||||||||||||||| || | |||||| |||  |||| || || ||| ||| || ||||||||||||||||||||||||    
T  7073641 aaatagtcactttagtccttcattctgcagcttactgtcgcataggtctctgattcgggattaaatacaaataagtctctg 7073721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 33163574 - 33163510
Alignment:
Q  300 tcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    |||||||||||||||||||| ||||  |||||| ||||| ||| |||||||  ||||||||||||    
T  33163574 tcactttagtctttgactctacaccacgttgtcgcaaagttctctgactcataattaaatacaaa 33163510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 40000455 - 40000376
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctct 373  Q
    |||| |||||||| |||  ||||||||||||| | ||| ||| |||||  ||| | ||||||||||||||||||||||||    
T  40000455 aaattgtcactttggtccctgactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctct 40000376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 8421007 - 8420962
Alignment:
Q  329 tgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||||||||| || ||||||||||||||||||||||  ||||||||    
T  8421007 tgtcacaaaggtcattgactcaggattaaatacaaagtagtctctg 8420962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 22856682 - 22856761
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctct 373  Q
    |||| ||||||||||||  ||||||||||||  ||||| ||||||||  |||||||||||||||||||||| ||||||||    
T  22856682 aaatggtcactttagtcactgactctgcaccacgttgttacaaagattcttgactcaggattaaatacaaagaagtctct 22856761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 10332983 - 10333064
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||| |||||||||||||||||  ||||| ||||||| ||||||||| || || |||| ||||||||||||| |||||||||    
T  10332983 agagcaaatagtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtc 10333064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 371
Target Start/End: Complemental strand, 32665898 - 32665814
Alignment:
Q  287 aaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtct 371  Q
    |||||| |||||||||||||||||  ||| |||||| || | ||||||| || ||| ||||||| ||||||||||||||||||||    
T  32665898 aaagagcaaatagtcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtct 32665814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 374
Target Start/End: Original strand, 5782410 - 5782496
Alignment:
Q  288 aagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    ||||| |||| |||| |||||||  ||||||||||||| | ||||||| || ||| ||||||| ||||||||||||| |||||||||    
T  5782410 aagagcaaattgtcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctg 5782496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 6612421 - 6612501
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||||||||||||||||  ||||||||||||| | ||| | |||  ||| ||||||| ||||||||||||| |||||||||    
T  6612421 aaatagtcactttagtccctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctg 6612501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 44719347 - 44719418
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaata 360  Q
    ||||||||| ||||||||  || |||||| |||| || |||||||||||||||| | |||||||||||||||    
T  44719347 agagtaaatggtcactttgatccttgactttgcatctcgttgtcacaaagatctctaactcaggattaaata 44719418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 7945656 - 7945595
Alignment:
Q  313 tgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    ||||||||||||| | ||||||| || |   |||||||||||||||||||||||||||||||    
T  7945656 tgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctg 7945595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 8975154 - 8975227
Alignment:
Q  287 aaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaata 360  Q
    ||||||||||| |||||||| |||  | ||| |||||||||||||||||||| ||  ||||||| |||||||||    
T  8975154 aaagagtaaatggtcactttggtccctaactttgcaccttgttgtcacaaaggtccctgactcaagattaaata 8975227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 10333307 - 10333227
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    ||||||||||| || ||| ||| |||||| || | ||| ||| || ||| ||||||| |||||||||||||||||||||||    
T  10333307 aaatagtcactataatctctgattctgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctg 10333227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 18898017 - 18897945
Alignment:
Q  288 aagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaata 360  Q
    |||||||||| ||||||||  |  ||||||||||| ||  ||||||||||| ||| |||||||||||||||||    
T  18898017 aagagtaaatggtcactttgattcttgactctgcaactcattgtcacaaaggtctctgactcaggattaaata 18897945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 373
Target Start/End: Original strand, 52439476 - 52439560
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctct 373  Q
    |||| ||||||||||||||| |  ||| |||||| || | ||||||| || ||| || |||||||||||||||| ||||||||||    
T  52439476 agagcaaatagtcactttagcccctgattctgcagctcgctgtcacataggtctctggctcaggattaaatacagataagtctct 52439560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 374
Target Start/End: Complemental strand, 6614050 - 6614020
Alignment:
Q  344 tgactcaggattaaatacaaataagtctctg 374  Q
    |||||||||||||||||||||||||||||||    
T  6614050 tgactcaggattaaatacaaataagtctctg 6614020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 374
Target Start/End: Complemental strand, 9341096 - 9341066
Alignment:
Q  344 tgactcaggattaaatacaaataagtctctg 374  Q
    |||||||||||||||||||||||||||||||    
T  9341096 tgactcaggattaaatacaaataagtctctg 9341066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 1407641 - 1407686
Alignment:
Q  293 taaatagtcactttagtctttgactctgcaccttgttgtcacaaag 338  Q
    |||||| |||||||  ||| ||||||||||||||||||||||||||    
T  1407641 taaataatcactttcatctctgactctgcaccttgttgtcacaaag 1407686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 374
Target Start/End: Original strand, 3117646 - 3117731
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||| ||||||||| |||||||  | ||||| ||| | ||| |||||||| ||| ||||||| ||||||||||||| || ||||||    
T  3117646 agagcaaatagtcattttagtccctaactcttcacatcgttatcacaaaggtctctgactcaagattaaatacaaagaaatctctg 3117731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 9339648 - 9339721
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataa 367  Q
    |||||||| ||||||||  ||| |||||| || ||||| ||| || ||  ||||||||||||||||||||||||    
T  9339648 aaatagtccctttagtccctgattctgcagctcgttgttacataggtccctgactcaggattaaatacaaataa 9339721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 39977365 - 39977410
Alignment:
Q  325 ttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||||||||||||  ||| |||||||||||||||||||||| ||||    
T  39977365 ttgttgtcacaaatgtctctgactcaggattaaatacaaattagtc 39977410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 374
Target Start/End: Original strand, 1001164 - 1001236
Alignment:
Q  302 actttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||||||||  ||||| ||||||| |||| ||||||| ||  |||||| ||||||||||||||  ||||||||    
T  1001164 actttagtccatgactttgcacctcgttgccacaaaggtccatgactcgggattaaatacaaagtagtctctg 1001236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 21619712 - 21619652
Alignment:
Q  304 tttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    |||||| | |||| |||||||| | ||||||||   |||||||||||||||||||||||||    
T  21619712 tttagtttctgaccctgcacctcgctgtcacaagagtctttgactcaggattaaatacaaa 21619652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 50107328 - 50107244
Alignment:
Q  290 gagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||||| | |||||||| |||| ||| |||||||| |||| |||||||| |   ||| |||||||||||||||||  ||||||||    
T  50107328 gagtaactggtcactttggtctctgattctgcaccatgttatcacaaaggttactgattcaggattaaatacaaaatagtctctg 50107244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 1953099 - 1953014
Alignment:
Q  285 aaaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtct 371  Q
    ||||||||||||||||||||||||||  ||| |||||| || ||||||| | |||||| ||||| ||||||| ||||||||||||||    
T  1953099 aaaaagagtaaatagtcactttagtccctgattctgcagctcgttgtcatatagatctctgact-aggattacatacaaataagtct 1953014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 41753988 - 41754076
Alignment:
Q  282 tataaaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||||| ||| |||||||||||||||||  ||  ||||||||||| ||||||| || ||  ||||||||||||||||| ||| |||||    
T  41753988 tataaaaggagcaaatagtcactttagtccctggttctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtc 41754076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 289 - 369
Target Start/End: Complemental strand, 41754920 - 41754841
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagt 369  Q
    |||| |||||||||||||| || | || ||||||||| | ||||||| |||||| ||||||||||||||||||||| ||||    
T  41754920 agagcaaatagtcactttaatcct-gattctgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagt 41754841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 364
Target Start/End: Original strand, 8569404 - 8569480
Alignment:
Q  288 aagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    ||||||||||  |||||||  || |||||||| ||||| | | |||||||| ||||||||||| |||||||||||||    
T  8569404 aagagtaaatgatcactttgatcattgactcttcacctcgctctcacaaaggtctttgactcatgattaaatacaaa 8569480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 10407705 - 10407629
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||||||||||||||||| ||| |||||| ||   ||||||| || || |||||| ||||||||| |||||||||||    
T  10407705 aaatagtcactttagtctctgattctgcagctcactgtcacataggtcattgacttaggattaaacacaaataagtc 10407629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 32898566 - 32898490
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||||||||||||||||  |||||||||| ||   ||||||| || ||  ||||| |||||||||||||||||||||    
T  32898566 aaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtc 32898490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 28005364 - 28005415
Alignment:
Q  313 tgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    ||||||| ||||| |||||||||||||||  ||||||||||| |||||||||    
T  28005364 tgactctacacctcgttgtcacaaagatccctgactcaggatcaaatacaaa 28005415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 28062667 - 28062718
Alignment:
Q  313 tgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    ||||||| ||||| |||||||||||||||  ||||||||||| |||||||||    
T  28062667 tgactctacacctcgttgtcacaaagatccctgactcaggatcaaatacaaa 28062718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 31075415 - 31075340
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    ||||||||| |||| ||| |||| ||||||||||||| ||||| |||||| |  ||| ||||| ||||||||||||    
T  31075415 agagtaaatggtcaatttggtctctgactctgcacctcgttgttacaaaggttcttggctcagcattaaatacaaa 31075340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 371
Target Start/End: Complemental strand, 5965564 - 5965486
Alignment:
Q  293 taaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtct 371  Q
    |||||||||| || ||||| ||| | | ||||| |||||||||||  ||  ||||||||||||||||||||| ||||||    
T  5965564 taaatagtcatttcagtctctgattttacacctcgttgtcacaaatgtccctgactcaggattaaatacaaagaagtct 5965486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 31073988 - 31074066
Alignment:
Q  286 aaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    |||||||||||| || |||||| ||  |||||||||| |||| |||||||||  ||| |||||| ||||||||| ||||    
T  31073988 aaaagagtaaatggttactttaatccctgactctgcatcttgctgtcacaaaagtctctgactctggattaaatgcaaa 31074066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 362
Target Start/End: Complemental strand, 39138792 - 39138716
Alignment:
Q  285 aaaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaataca 362  Q
    ||||| ||||||| ||||||||| || || |||||||||||| |||| |||||||| ||| ||| | |||||||||||    
T  39138792 aaaaatagtaaattgtcactttaatccttaactctgcaccttattgttacaaagatattttact-aagattaaataca 39138716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 9625194 - 9625262
Alignment:
Q  296 atagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    |||||||||||  ||||||||||| ||| | ||||||||||||| |  ||||| ||||||||| |||||    
T  9625194 atagtcactttgatctttgactctacacgtcgttgtcacaaagaccactgacttaggattaaacacaaa 9625262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 369
Target Start/End: Original strand, 30134563 - 30134643
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagt 369  Q
    |||| ||||| ||||||||||| || ||||||||||| | |||||||||| ||    ||||| ||||||||||||| ||||    
T  30134563 agagcaaataatcactttagtccttaactctgcacctcgctgtcacaaaggtcccctactcatgattaaatacaaagaagt 30134643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 12676596 - 12676512
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctct 373  Q
    ||||||||||||||||||  | | ||||||||||||| |||||||||| | ||| || ||||||||||||||||||  |||||||    
T  12676596 agagtaaatagtcactttgatatctgactctgcacctcgttgtcacaatggtctctgtctcaggattaaatacaaagtagtctct 12676512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 374
Target Start/End: Original strand, 30748001 - 30748081
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||||||||||||||||  ||| ||||||||| | ||||||| || ||  ||||| ||||||||||||||| |||||||||    
T  30748001 aaatagtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctg 30748081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 31218957 - 31219032
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagt 369  Q
    |||| ||||||||| ||| ||||||||||||| | ||||||| || || || ||||||||||||||||||| ||||    
T  31218957 aaatggtcactttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagt 31219032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 6468906 - 6468822
Alignment:
Q  290 gagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||||||| ||||||||  ||||||||||||||  | | |||||||||| ||  ||||||| |||||||||||||  ||||||||    
T  6468906 gagtaaatggtcactttgttctttgactctgcatatcgctgtcacaaaggtccctgactcatgattaaatacaaaatagtctctg 6468822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 365
Target Start/End: Original strand, 5265193 - 5265272
Alignment:
Q  286 aaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaat 365  Q
    ||||||||||||||||| ||||||  |||| ||||||||| ||||| |||| | ||| ||| ||| |||||||| |||||    
T  5265193 aaaagagtaaatagtcattttagttcttgattctgcacctcgttgttacaatggtctctgattcaagattaaatgcaaat 5265272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 369
Target Start/End: Original strand, 10855837 - 10855884
Alignment:
Q  322 accttgttgtcacaaagatctttgactcaggattaaatacaaataagt 369  Q
    |||||| ||| |||||| ||||||||||||||||||||||||| ||||    
T  10855837 accttgctgttacaaaggtctttgactcaggattaaatacaaagaagt 10855884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 369
Target Start/End: Complemental strand, 31219281 - 31219206
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagt 369  Q
    |||| ||||||||| ||  ||||||||||||| | ||||||| || || || ||||||||||||||||||| ||||    
T  31219281 aaatggtcactttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagt 31219206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 357
Target Start/End: Complemental strand, 12676239 - 12676170
Alignment:
Q  288 aagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaa 357  Q
    ||||||||||||||||||| ||| |||||||| |||||   | |||||| | || |||||||||||||||    
T  12676239 aagagtaaatagtcactttggtcattgactctacacctgtctatcacaatggtccttgactcaggattaa 12676170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 24940394 - 24940447
Alignment:
Q  285 aaaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaag 338  Q
    |||| ||| |||| |||||||||||  |||||||||||||| ||||||||||||    
T  24940394 aaaatgagcaaattgtcactttagtacttgactctgcacctcgttgtcacaaag 24940447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 42278051 - 42278126
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagt 369  Q
    ||||||||||||||||| |||| |||||| |||| ||||||| || ||  |||||| |||||||||||||||||||    
T  42278051 aaatagtcactttagtccttgattctgcagcttgctgtcacataggtccctgactcgggattaaatacaaataagt 42278126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 370
Target Start/End: Original strand, 47874562 - 47874642
Alignment:
Q  290 gagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||||||||||||||||||||| ||| |||||| || | | ||||| || ||  ||||||| |||||||||||||||||||    
T  47874562 gagtaaatagtcactttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtc 47874642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 26173062 - 26172983
Alignment:
Q  295 aatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    ||||||||||||||||    ||| ||||||||  ||||| |||| || |||||||| |||||||||||||||||||||||    
T  26173062 aatagtcactttagtccccaactatgcaccttactgtcagaaaggtccttgactcaagattaaatacaaataagtctctg 26172983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 369
Target Start/End: Original strand, 39868912 - 39868999
Alignment:
Q  282 tataaaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagt 369  Q
    ||||||| |||||||| || |||||||||| ||||||||||||| | ||| |||||| ||  |||||||  |||||||||||| ||||    
T  39868912 tataaaatgagtaaattgttactttagtctctgactctgcacctcgctgttacaaaggtccctgactcataattaaatacaaacaagt 39868999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 370
Target Start/End: Original strand, 31844718 - 31844800
Alignment:
Q  288 aagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||| |||||||||||||||||  |  |||||||||| | ||||||| || ||  ||||||||||||||||||||| |||||    
T  31844718 aagagcaaatagtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtc 31844800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 364
Target Start/End: Complemental strand, 53771170 - 53771100
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    |||| ||||||||||||  ||||||||||||| ||||||||| || ||  |||||||| ||||||||||||    
T  53771170 aaatggtcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaa 53771100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 19051352 - 19051272
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtctctg 374  Q
    |||| ||||||||||||  ||||||| ||||| |||| ||||||| ||  ||||||  ||||||||||||| |||||||||    
T  19051352 aaatggtcactttagtccctgactctacacctcgttggcacaaaggtcactgactcgagattaaatacaaagaagtctctg 19051272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 370
Target Start/End: Complemental strand, 42392013 - 42391933
Alignment:
Q  290 gagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||||||  |||||||||||| |||||| ||||||   ||||||| || ||| ||||||| |||||||||||||| ||||    
T  42392013 gagtaaatgatcactttagtctctgactccgcacctcactgtcacataggtctctgactcatgattaaatacaaattagtc 42391933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 364
Target Start/End: Complemental strand, 31845076 - 31845006
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    ||||| |||||||||| ||||| | |||| |||||||||| | || | | |||||||||||||||||||||    
T  31845076 aaatactcactttagtttttgattttgcatcttgttgtcatataggtttctgactcaggattaaatacaaa 31845006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 54574448 - 54574502
Alignment:
Q  315 actctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagt 369  Q
    |||||||| || | ||||||| || ||| ||||||||||||||||||||||||||    
T  54574448 actctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagt 54574502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 363
Target Start/End: Original strand, 11269892 - 11269961
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaa 363  Q
    |||| |||||||| |||||| ||| | ||||| |||||||||||| ||| ||| ||||| ||||||||||    
T  11269892 aaatggtcactttggtctttaactttacacctcgttgtcacaaaggtctatgattcagggttaaatacaa 11269961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 47878614 - 47878529
Alignment:
Q  285 aaaaagagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||| || |||||||||||||  ||  ||||||||||||| | ||| ||| || ||  |||||| ||||||||||||||||||||    
T  47878614 aaaaacagcaaatagtcactttgatccctgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtc 47878529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 369
Target Start/End: Original strand, 26170637 - 26170717
Alignment:
Q  289 agagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagt 369  Q
    |||| ||||||| | |||||||| ||||| ||||||| ||||| |||||  | | ||||| | ||||||||||||||||||    
T  26170637 agagcaaatagttagtttagtctctgactttgcacctcgttgttacaaaagtatctgacttaagattaaatacaaataagt 26170717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 364
Target Start/End: Complemental strand, 36647 - 36574
Alignment:
Q  290 gagtaaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaa 364  Q
    |||||||| ||||||||||||  |||| |||||||| || ||||||||| ||| | |||| ||||||||||||||    
T  36647 gagtaaattgtcactttagtccctgaccctgcacctcgt-gtcacaaaggtctctaactcgggattaaatacaaa 36574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 5601 - 5677
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    |||| ||||||||||||  | ||| ||||||| ||||| |||||  ||| |||||||| |||||||||||| |||||    
T  5601 aaattgtcactttagtcactcactttgcacctcgttgtgacaaatgtctctgactcagaattaaatacaaagaagtc 5677  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 79075 - 79151
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||||||| ||||||   ||||||||||||| | ||||||| || || |||||||| ||||||||| ||| |||||    
T  79075 aaatagtcaatttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtc 79151  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 116057 - 116133
Alignment:
Q  294 aaatagtcactttagtctttgactctgcaccttgttgtcacaaagatctttgactcaggattaaatacaaataagtc 370  Q
    ||||||||||||||||   | | |||||| || | ||||||| || ||  |||||||||||||||||||||||||||    
T  116057 aaatagtcactttagttcctcattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtc 116133  T

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