View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_76 (Length: 378)

Name: NF0856_low_76
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_76
NF0856_low_76
[»] chr5 (9 HSPs)
chr5 (30-367)||(1739520-1739857)
chr5 (30-367)||(1744857-1745197)
chr5 (43-367)||(1725184-1725502)
chr5 (30-142)||(1739349-1739461)
chr5 (30-142)||(1744692-1744804)
chr5 (178-365)||(1760728-1760914)
chr5 (96-245)||(1715552-1715704)
chr5 (33-127)||(1724763-1724857)
chr5 (33-218)||(1724901-1725086)
[»] chr3 (4 HSPs)
chr3 (86-207)||(3167618-3167739)
chr3 (106-207)||(3156552-3156653)
chr3 (30-207)||(2023129-2023306)
chr3 (93-207)||(3138820-3138934)
[»] chr7 (3 HSPs)
chr7 (93-230)||(7490802-7490933)
chr7 (93-187)||(7484085-7484179)
chr7 (93-141)||(9011746-9011794)
[»] chr8 (1 HSPs)
chr8 (106-207)||(23852503-23852607)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 367
Target Start/End: Original strand, 1739520 - 1739857
Alignment:
Q  30 atattaaatccttctcttgttggtttgagaaacatggagagtagtaatagtaaccgtggggtgggaattctaggatttggtggttcaactacttcaagga 129  Q
    |||||||| ||||| |||||| |||||||||| |||||| |||| ||||||||  ||||||  ||||||||||||||||||||| ||||| |||| ||||    
T  1739520 atattaaacccttcgcttgttagtttgagaaatatggagggtagcaatagtaatagtggggctggaattctaggatttggtggtgcaactgcttcgagga 1739619  T
Q  130 ttgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttcaagcacaatcataaacaataaaaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1739620 ttgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttcaagtacaatcataaacaataaaaa 1739719  T
Q  230 tagtgaggatcctactactaccaaggataatattgatctgtctaagtttaactcggaagaagaatcctccaattatgattcgtctgggcttgatttatca 329  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739720 tagtgaggatcatactactaccaaggataatattgatctgtctaagtttaactcggaagaagaatcctccaattatgattcgtctgggcttgatttatca 1739819  T
Q  330 cttaggctttaaattcaatttttatattttgttttcat 367  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1739820 cttaggctttaaattcaatttttatattttgttttcat 1739857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 367
Target Start/End: Original strand, 1744857 - 1745197
Alignment:
Q  30 atattaaatccttctcttgttggtttgagaaacatggagagtagtaatagtaaccgtggggtgggaattctaggatttggtggttcaactacttcaagga 129  Q
    |||||||| ||||| ||| || |||||||||| | | || |||| ||||||||  |||||   |||||| |||||||||||||| ||||| |||||||||    
T  1744857 atattaaacccttcactttttagtttgagaaatacgaagggtagcaatagtaatagtgggactggaattttaggatttggtggtgcaactgcttcaagga 1744956  T
Q  130 ttgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttcaagcacaatcataaacaataaaaa 229  Q
    |||||||||||| |||| ||||||||||||||||||  |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1744957 ttgaagatggtatgaataacaagattggtgctattactaaatttggagattcttctacaaatgttgccacaagttcaagcacaatcataaacaataaaaa 1745056  T
Q  230 tagtgaggatcctactactac---caaggataatattgatctgtctaagtttaactcggaagaagaatcctccaattatgattcgtctgggcttgattta 326  Q
    ||||| |||||||||||||||   ||||||| |||||||| |||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  1745057 tagtgtggatcctactactaccagcaaggatgatattgatttgtcgaagttcaacgcagaagaagaatcctccaattatgattcgtctgggcttgattta 1745156  T
Q  327 tcacttaggctttaaattcaatttttatattttgttttcat 367  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  1745157 tcacttaggctttaaattcagtttttatattttgttttcat 1745197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 43 - 367
Target Start/End: Original strand, 1725184 - 1725502
Alignment:
Q  43 ctcttgttggtttgagaaacatggagagtagtaatagtaaccgtggggtgggaattctaggatttggtggttcaactacttcaaggattgaagatggtac 142  Q
    |||||||| |||||||||| |||||||||||| ||| |      ||||  |||||||||||  ||||||||  |||||||||||||||||||||||  ||    
T  1725184 ctcttgttagtttgagaaatatggagagtagttataat------ggggctggaattctaggtattggtggtggaactacttcaaggattgaagatgacac 1725277  T
Q  143 gaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttcaagcacaatcataaacaataaaaatagtgaggatcct 242  Q
     ||| | || |||||||||||| | ||||  ||||||||||||| | |||||||||||||||||| | |||||||||| |||||||||| || |||| ||    
T  1725278 aaataataaaattggtgctatttttaaatggggagattcttctaaacatgttgctacaagttcaaacgcaatcataaaaaataaaaatattgtggatgct 1725377  T
Q  243 actactaccaaggataatattgatctgtctaagtttaactcggaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaa 342  Q
    ||||| ||||||||| |||||||| |||| ||||| ||  | |||||||||||||||||||||||||| | |||||||||||| ||||| || |||||||    
T  1725378 actaccaccaaggatgatattgatatgtcgaagttcaaagctgaagaagaatcctccaattatgattcatgtgggcttgatttgtcactaagactttaaa 1725477  T
Q  343 ttcaatttttatattttgttttcat 367  Q
    || | ||||||||||||||||||||    
T  1725478 tttagtttttatattttgttttcat 1725502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 1739349 - 1739461
Alignment:
Q  30 atattaaatccttctcttgttggtttgagaaacatggagagtagtaatagtaaccgtggggtgggaattctaggatttggtggttcaactacttcaagga 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739349 atattaaatccttctcttgttggtttgagaaacatggagagtagtaatagtaaccgtggggtgggaattctaggatttggtggttcaactacttcaagga 1739448  T
Q  130 ttgaagatggtac 142  Q
    |||||||||||||    
T  1739449 ttgaagatggtac 1739461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 1744692 - 1744804
Alignment:
Q  30 atattaaatccttctcttgttggtttgagaaacatggagagtagtaatagtaaccgtggggtgggaattctaggatttggtggttcaactacttcaagga 129  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||||    
T  1744692 atattaaatccttctcttattagtttgagaaacatggagagtagtaatagtaatcgtggggtaggaattctaggatttggtggtgcaattacttcaagga 1744791  T
Q  130 ttgaagatggtac 142  Q
    |||||||||||||    
T  1744792 ttgaagatggtac 1744804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 365
Target Start/End: Original strand, 1760728 - 1760914
Alignment:
Q  178 attcttctacaaatgttgctacaagttcaagcacaatcataaacaataaaaatagtgaggatcctactactaccaaggataatattgatctgtctaagtt 277  Q
    |||||||||||||| ||| ||||||||||| | |||||||| |||||||||||| || |  || ||||  |||| | ||| ||||| |||  || |||||    
T  1760728 attcttctacaaatattgatacaagttcaaactcaatcatacacaataaaaataatgtgtctcttacttataccgaagatgatattcatcaatcaaagtt 1760827  T
Q  278 taactcggaagaagaatcctccaattatgattcgtctgggcttgatttatcacttaggctttaaattcaatttttatattttgttttc 365  Q
     ||||  |||||||||||||||||||  || || | || ||||||||||||||||| ||||||||||| | |||||||||||||||||    
T  1760828 caactttgaagaagaatcctccaattcggaatcttatgcgcttgatttatcacttaagctttaaattc-agttttatattttgttttc 1760914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 1715704 - 1715552
Alignment:
Q  96 attctaggatttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattc---ttctacaaatg 192  Q
    |||||||||||||| ||| ||| || ||||| ||||||||||||||| ||| |||| ||||| | | ||||||||| |||||||||   |||| |||| |    
T  1715704 attctaggatttgggggtgcaattatttcaaagattgaagatggtaccaataacaaaattggagttcttataaaatttggagattcttcttctgcaaacg 1715605  T
Q  193 ttgctacaagttcaagcacaatcataaacaataaaaatagtgaggatcctact 245  Q
    |||||| ||||||||   ||||||| || ||||||||||| | ||||||||||    
T  1715604 ttgctataagttcaaattcaatcatgaaaaataaaaatagcgtggatcctact 1715552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 1724763 - 1724857
Alignment:
Q  33 ttaaatccttctcttgttggtttgagaaacatggagagtagtaatagtaaccgtggggtgggaattctaggatttggtggttcaactacttcaag 127  Q
    ||||| |||||||||||| |||||||||| |||||| ||||||||| |||  |||| || || ||||||||  ||||||||  ||||||||||||    
T  1724763 ttaaacccttctcttgttagtttgagaaatatggagggtagtaataataatagtggagttgggattctaggtattggtggtggaactacttcaag 1724857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 1724901 - 1725086
Alignment:
Q  33 ttaaatccttctcttgttggtttgagaaacatggagagtagtaatagtaaccgtggggtgggaattctaggatttggtggttcaactacttcaaggattg 132  Q
    ||||| |||||| ||||| |||||| ||| |||||| ||||||||||||   |||| || ||  |||||||  ||||||||  |||| ||||||||||||    
T  1724901 ttaaacccttcttttgttagtttgaaaaatatggagggtagtaatagtactagtggagttggggttctaggtattggtggtggaactgcttcaaggattg 1725000  T
Q  133 aagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttcaagcacaatcata 218  Q
    ||||| | |  ||| |||| ||| |||  ||| |||| |  ||||||||||  | |||||||||| ||||||||| | ||||||||    
T  1725001 aagatagcaaaaataacaaaatttgtggcattctaaagtgcggagattctttcaaaaatgttgcttcaagttcaaactcaatcata 1725086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 3167618 - 3167739
Alignment:
Q  86 tggggtgggaattctaggatttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttct 185  Q
    |||||| |||||||| ||  |||||||| ||| |||||||||||| ||||||||||| ||| | || |||||||||||| ||||||  ||||||||||||    
T  3167618 tggggttggaattcttggtattggtggtgcaagtacttcaaggatagaagatggtacaaataataaaattggtgctattctaaaattaggagattcttct 3167717  T
Q  186 acaaatgttgctacaagttcaa 207  Q
    ||||||||||||||||||||||    
T  3167718 acaaatgttgctacaagttcaa 3167739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 3156653 - 3156552
Alignment:
Q  106 ttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttc 205  Q
    |||||||| ||| |||||||||||||||||||||||| ||| | || || ||||||||| ||||||  |||||||||||||||||||||||| |||||||    
T  3156653 ttggtggtgcaagtacttcaaggattgaagatggtacaaataataaaataggtgctattctaaaattaggagattcttctacaaatgttgctgcaagttc 3156554  T
Q  206 aa 207  Q
    ||    
T  3156553 aa 3156552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 2023129 - 2023306
Alignment:
Q  30 atattaaatccttctcttgttggtttgagaaacatggagagtagtaatagtaaccgtggggtgggaattctaggatttggtggttcaactacttcaagga 129  Q
    |||||||| |||||||||||| |||||||||| |||||| | |||||||||||   | |||| |||||||||||    || | | ||||||||| |||||    
T  2023129 atattaaacccttctcttgttagtttgagaaatatggagggcagtaatagtaattctagggttggaattctaggtaccggggatgcaactactttaagga 2023228  T
Q  130 ttgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttcaa 207  Q
    |||||||||||   ||| | || |||||| ||| | |||| | || ||||||||||||||||||| | ||||||||||    
T  2023229 ttgaagatggtgaaaataataaaattggtactaatctaaagtttgaagattcttctacaaatgttacaacaagttcaa 2023306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 207
Target Start/End: Complemental strand, 3138934 - 3138820
Alignment:
Q  93 ggaattctaggatttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatg 192  Q
    |||| ||||||  |||||||| |||||||||||| ||| ||| |||||||  || | || |||||||||||| || |||  ||||||||||||||||| |    
T  3138934 ggaaatctaggtattggtggtgcaactacttcaaagatcgaatatggtacatataataaaattggtgctattttagaattgggagattcttctacaaagg 3138835  T
Q  193 ttgctacaagttcaa 207  Q
    ||||||||| |||||    
T  3138834 ttgctacaatttcaa 3138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 93 - 230
Target Start/End: Complemental strand, 7490933 - 7490802
Alignment:
Q  93 ggaattctaggatttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatg 192  Q
    |||| |||||| ||||||||  ||| ||||||||| |||||||||||||| ||| | || |||||||||||| |||||  ||||||||||||||          
T  7490933 ggaactctaggttttggtggagcaagtacttcaagaattgaagatggtacaaataataaaattggtgctattctaaaacttggagattcttcta------ 7490840  T
Q  193 ttgctacaagttcaagcacaatcataaacaataaaaat 230  Q
    ||||||||||||||||| ||| || |||||| ||||||    
T  7490839 ttgctacaagttcaagctcaaacacaaacaagaaaaat 7490802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 7484179 - 7484085
Alignment:
Q  93 ggaattctaggatttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctac 187  Q
    |||| |||||| ||||||||  ||| ||||||||| ||| |||||||||| ||| | || |||||||||||| |||||  ||| |||||||||||    
T  7484179 ggaactctaggttttggtggagcaagtacttcaagaattaaagatggtacaaataataaaattggtgctattctaaaacttggtgattcttctac 7484085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 9011794 - 9011746
Alignment:
Q  93 ggaattctaggatttggtggttcaactacttcaaggattgaagatggta 141  Q
    ||||||||||| ||||||||| |||||| ||||| ||||||||||||||    
T  9011794 ggaattctagggtttggtggtgcaactagttcaaagattgaagatggta 9011746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 23852503 - 23852607
Alignment:
Q  106 ttggtggttcaactacttcaaggattgaagatggtacgaatgacaaga---ttggtgctattataaaatctggagattcttctacaaatgttgctacaag 202  Q
    |||| ||| ||||||||||||| || ||||||||||| ||| | || |   ||||||||||| ||||||  |||||||||||||||||| ||||||||||    
T  23852503 ttggcggtgcaactacttcaagaatcgaagatggtacaaataataataaaattggtgctattttaaaattgggagattcttctacaaatattgctacaag 23852602  T
Q  203 ttcaa 207  Q
    |||||    
T  23852603 ttcaa 23852607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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