View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_77 (Length: 378)

Name: NF0856_low_77
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_77
NF0856_low_77
[»] chr1 (8 HSPs)
chr1 (30-368)||(27444070-27444405)
chr1 (30-278)||(27432298-27432540)
chr1 (30-144)||(27214717-27214831)
chr1 (34-144)||(27220679-27220789)
chr1 (34-128)||(27207362-27207456)
chr1 (37-82)||(27388702-27388747)
chr1 (36-82)||(27416358-27416404)
chr1 (40-82)||(27409658-27409700)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 30 - 368
Target Start/End: Original strand, 27444070 - 27444405
Alignment:
Q  30 cccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgcaagacccgactacgccatcaccttctgtccatcagcttgaaca 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  27444070 cccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgcaagacccgactatgccatcaccttctgtccatcagcttgaact 27444169  T
Q  130 ccatcagcaaacaaaatatgccgtcttaattaatttttgttaatttttgtcnnnnnnnnnnnntaagtgcatgtatacaaatgaaacatatacagacaca 229  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| | ||||||||||||    
T  27444170 ccatgaccaaacaaaatatgccgtcttaattaatttttgttaatttttgtcaaaaataaaa--taagtgcatgtatacaaatgaa-cgtatacagacaca 27444266  T
Q  230 tttgtcatgtaatataaaccacaagtattttcaattattattgcagtaannnnnnnataatttattgtcttgatgggtgtattatataggttatgctcct 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| |||||||||||||||||||||    
T  27444267 tttgtcatgtaatataaaccacaagtattttcaattattattgcagtaatttttttataatttattgtcttgatgggtttattatataggttatgctcct 27444366  T
Q  330 tatgtcgtcatcagcatttaatcttgtcctttttctgtg 368  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27444367 tatgtcgtcatcagcatttaatcttgtcctttttctgtg 27444405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 27432540 - 27432298
Alignment:
Q  30 cccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgcaagacccgactacgccatcaccttctgtccatcagcttgaaca 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  || |||     
T  27432540 cccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgcaagacccgattacgccatcaccttctgcccatcaaattaaact 27432441  T
Q  130 ccatcagcaaacaaaatatgccgtcttaattaatttttgttaatttttgtcnnnnnnnnnnnntaagtgcatgtatacaaatgaaacatatacagacaca 229  Q
     ||  | ||||||||||||||||||||||||||||| ||    | ||||||            |||||||||||||||||||||||| ||||||||||||    
T  27432440 tcacgatcaaacaaaatatgccgtcttaattaatttatg----tctttgtc--aaaaataaaataagtgcatgtatacaaatgaaacgtatacagacaca 27432347  T
Q  230 tttgtcatgtaatataaaccacaagtattttcaattattattgcagtaa 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27432346 tttgtcatgtaatataaaccacaagtattttcaattattattgcagtaa 27432298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 27214831 - 27214717
Alignment:
Q  30 cccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgcaagacccgactacgccatcaccttctgtccatcagcttgaaca 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  27214831 cccgggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgcaagacccgactatgccatcaccttctgtccatcagcttgaact 27214732  T
Q  130 ccatcagcaaacaaa 144  Q
    |||| | ||||||||    
T  27214731 ccatgaccaaacaaa 27214717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 27220789 - 27220679
Alignment:
Q  34 ggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgcaagacccgactacgccatcaccttctgtccatcagcttgaacaccat 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27220789 ggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgcaagacccgactacgccatcaccttctgtccatcagcttgaactccat 27220690  T
Q  134 cagcaaacaaa 144  Q
     | ||||||||    
T  27220689 gaccaaacaaa 27220679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 27207456 - 27207362
Alignment:
Q  34 ggtgcttatagctatgcttacgacgataagagcagcactttcacttgctttgcaagacccgactacgccatcaccttctgtccatcagcttgaac 128  Q
    |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||    
T  27207456 ggtgcttacagttatgcttacgacgataagagcagcattttcacttgctttgcaagacccgactatgcaatcaccttctgcccatcagcttgaac 27207362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 27388747 - 27388702
Alignment:
Q  37 gcttatagctatgcttacgacgataagagcagcactttcacttgct 82  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  27388747 gcttatagctatgcttacgatgataagagcagcactttcacttgct 27388702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 82
Target Start/End: Original strand, 27416358 - 27416404
Alignment:
Q  36 tgcttatagctatgcttacgacgataagagcagcactttcacttgct 82  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||    
T  27416358 tgcttatagctatgcttacgatgataatagcagcactttcacttgct 27416404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 27409700 - 27409658
Alignment:
Q  40 tatagctatgcttacgacgataagagcagcactttcacttgct 82  Q
    |||||||||||||||||  ||| ||||||||||||||||||||    
T  27409700 tatagctatgcttacgataatacgagcagcactttcacttgct 27409658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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