View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_78 (Length: 377)

Name: NF0856_low_78
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_78
NF0856_low_78
[»] chr5 (6 HSPs)
chr5 (94-366)||(26405334-26405605)
chr5 (94-266)||(26045750-26045924)
chr5 (87-272)||(8297583-8297773)
chr5 (118-234)||(14302254-14302373)
chr5 (90-236)||(13954031-13954178)
chr5 (94-178)||(33258666-33258753)
[»] chr3 (9 HSPs)
chr3 (110-272)||(37998964-37999125)
chr3 (118-273)||(14879550-14879708)
chr3 (123-226)||(50518903-50519007)
chr3 (132-273)||(25647800-25647942)
chr3 (138-266)||(14194054-14194183)
chr3 (98-271)||(37123497-37123672)
chr3 (94-176)||(7105052-7105136)
chr3 (151-273)||(39021122-39021244)
chr3 (90-169)||(4170963-4171042)
[»] chr7 (4 HSPs)
chr7 (118-270)||(24324609-24324761)
chr7 (117-273)||(8745267-8745426)
chr7 (153-280)||(3478459-3478583)
chr7 (118-273)||(6716547-6716704)
[»] chr2 (11 HSPs)
chr2 (96-273)||(10173368-10173544)
chr2 (145-273)||(37770480-37770609)
chr2 (87-272)||(7696077-7696263)
chr2 (94-169)||(12343037-12343112)
chr2 (145-273)||(16952223-16952349)
chr2 (145-273)||(17022888-17023014)
chr2 (145-273)||(17060194-17060320)
chr2 (87-171)||(1269696-1269780)
chr2 (143-175)||(7874502-7874534)
chr2 (94-143)||(4974990-4975039)
chr2 (94-143)||(4992898-4992947)
[»] chr4 (10 HSPs)
chr4 (118-273)||(16832830-16832988)
chr4 (89-283)||(41117749-41117944)
chr4 (90-272)||(49528187-49528370)
chr4 (118-273)||(48098447-48098606)
chr4 (96-178)||(22810949-22811032)
chr4 (95-268)||(19673219-19673392)
chr4 (151-266)||(25753293-25753409)
chr4 (94-273)||(38637020-38637200)
chr4 (185-273)||(19815099-19815187)
chr4 (143-175)||(35341177-35341209)
[»] chr1 (11 HSPs)
chr1 (87-273)||(31290799-31290986)
chr1 (123-235)||(9313121-9313236)
chr1 (208-273)||(6583118-6583183)
chr1 (92-165)||(10785246-10785319)
chr1 (90-273)||(34774985-34775170)
chr1 (209-273)||(16147672-16147736)
chr1 (118-216)||(4430862-4430962)
chr1 (145-178)||(27102401-27102434)
chr1 (87-169)||(32882584-32882668)
chr1 (149-229)||(46768340-46768421)
chr1 (89-169)||(41126271-41126353)
[»] scaffold0050 (1 HSPs)
scaffold0050 (94-269)||(36827-37001)
[»] scaffold0063 (1 HSPs)
scaffold0063 (87-251)||(58263-58430)
[»] chr6 (1 HSPs)
chr6 (118-251)||(3880406-3880543)
[»] chr8 (3 HSPs)
chr8 (94-236)||(10248353-10248497)
chr8 (176-271)||(17656872-17656967)
chr8 (210-268)||(8862505-8862563)
[»] scaffold0119 (1 HSPs)
scaffold0119 (87-171)||(41922-42006)
[»] scaffold0200 (1 HSPs)
scaffold0200 (118-171)||(19596-19649)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 94 - 366
Target Start/End: Original strand, 26405334 - 26405605
Alignment:
Q  94 cacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccccaaagaaaaacatccatcaaaatta 193  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||||||    
T  26405334 cacctaaaacagacttcttcatggaaatgac-actgttaaaaccatatccaatcacccatcgtcactactcacctcaaagaaaaacactcatcaaaatta 26405432  T
Q  194 aattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctctggatctctgaaggagcagtt 293  Q
    || ||  ||||||||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  26405433 aactcctcgtcctgaacaccaaagtcgagccacctccgaaaagctcatatccgaaagaccaatcagcttccaccacctctcgatctccgaaggagcagtt 26405532  T
Q  294 tattatactttgtgacaaataattctcaatctattttaggttcaattttagttagacatgtacatcaataaat 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26405533 tattatactttgtgacaaataattctcaatctattttaggttcaattttagttagacatgtacatcaataaat 26405605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 94 - 266
Target Start/End: Original strand, 26045750 - 26045924
Alignment:
Q  94 cacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcaccccaaagaaaaacatccatcaaaat 191  Q
    |||||||||||||||| |||||| ||| |||||| || ||||| | |||||||  | |||||||||||||||||||||||||||||||| || |||||||    
T  26045750 cacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcaccccaaagaaaaacacccctcaaaat 26045849  T
Q  192 taaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccac 266  Q
    |||| || |  |||| |||||||||  |||| ||||||||||||||||||||| |||||| |||| |||||||||    
T  26045850 taaactctcaatcctaaacaccaaagttgagtcacctccgaaaagctcatatctgaaagatcaatcagcttccac 26045924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 87 - 272
Target Start/End: Complemental strand, 8297773 - 8297583
Alignment:
Q  87 acatcatcacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcac-----cccaaagaaaaacat 181  Q
    |||||| ||||||||||| |||  |||| | ||| ||||| ||| ||||| || |||||||||| |||||||||||||||     ||||||||||||||     
T  8297773 acatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaaaacgatttccaaccacctatcgtcactactcactcacccccaaagaaaaacac 8297674  T
Q  182 ccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctc 272  Q
    || ||||||||||| || || || ||||||||||||| ||||||| |||||||||||| |||||||||||||| | | |||||||||||||    
T  8297673 ccctcaaaattaaactccccatcatgaacaccaaaaccgagccacatccgaaaagctcctatccgaaagaccattcaacttccaccacctc 8297583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 14302254 - 14302373
Alignment:
Q  118 aaacgaccactgttaaaaccatatccaac--cacccatcgtcactactca-ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacacca 214  Q
    ||||||||| ||| ||||| |||||||||  ||||  ||||||||||||| ||||||||||||| | || ||||||||||| || |  ||||||||||||    
T  14302254 aaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaaaaatacccctcaaaattaaactcccactcctgaacacca 14302353  T
Q  215 aaactgagccacctccgaaa 234  Q
    || ||||||||  |||||||    
T  14302354 aagctgagccatatccgaaa 14302373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 13954031 - 13954178
Alignment:
Q  90 tcatcacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcaccccaaagaaaaacatccatca 187  Q
    ||||| |||||||||||||| |||||| | ||||| ||||| ||||| |||||| ||  ||||||||||||| |||| |||| ||   ||||| || ||     
T  13954031 tcatctcctaaaacagactttttcatgaagacgactactgtaaaaacaatatcccacatcacccatcgtcacaactctcccccaa-cgaaacacccctct 13954129  T
Q  188 aaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaag 236  Q
    |||||||| || | ||||| ||| ||||| ||||||||| |||||||||    
T  13954130 aaattaaactcccagtcctcaacgccaaagctgagccacatccgaaaag 13954178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 33258666 - 33258753
Alignment:
Q  94 cacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcca--accacccatcgtcactactcacccc-aaagaaaaa 178  Q
    |||||||||||||  | |||| | || |||||||||| ||||| |||||||  |||| |||||| ||||||||||||| |||||||||    
T  33258666 cacctaaaacagatctcttcacgaaagcgaccactgtaaaaacgatatccaataccatccatcgccactactcacccctaaagaaaaa 33258753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 110 - 272
Target Start/End: Original strand, 37998964 - 37999125
Alignment:
Q  110 attcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaa 209  Q
    ||||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||||   ||| ||||||| |||| ||||||||| |  ||||||| ||    
T  37998964 attcatgaaaacgaccactgttaaaacgatatccaaccactcatcgtcaccactcacaaaaaa-aaaaacacccattaaaattaaacttcccgtcctaaa 37999062  T
Q  210 caccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctc 272  Q
    |||||||  ||| |||||||| |||||||| ||||| ||||| ||||||||||||||||||||    
T  37999063 caccaaagttgatccacctccaaaaagctcctatccaaaagatcaattagcttccaccacctc 37999125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 273
Target Start/End: Complemental strand, 14879708 - 14879550
Alignment:
Q  118 aaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacacca 214  Q
    ||||||||||||  ||||| |||||||||  ||| ||||||||||| ||||||| ||||||||||| || ||||||||||| || | | | |||||||||    
T  14879708 aaacgaccactgaaaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaaaaacacccctcaaaattaaactcccagacttgaacacca 14879609  T
Q  215 aaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 273  Q
    || | ||||||| |||||||||||| |||| |||||| || | ||||||||||||||||    
T  14879608 aacccgagccacatccgaaaagctcctatctgaaagatcattaagcttccaccacctct 14879550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 50518903 - 50519007
Alignment:
Q  123 accactgttaaaaccatatccaaccacccatcgtcactactcacc-ccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactga 221  Q
    |||||||| ||||| ||||| ||| | |||||||||||||||||| ||||||||||||| || | |||| |||||||  |||||||||||||||| ||||    
T  50518903 accactgtaaaaacgatatctaacgatccatcgtcactactcacctccaaagaaaaacacccctaaaaaataaattcctcgtcctgaacaccaaagctga 50519002  T
Q  222 gccac 226  Q
    |||||    
T  50519003 gccac 50519007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 132 - 273
Target Start/End: Complemental strand, 25647942 - 25647800
Alignment:
Q  132 aaaaccatatccaaccacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctcc 230  Q
    ||||| ||||||||||| ||||| |||||||||||||| ||| ||||||| || | |||| |||   |  | |||||| ||||||||||||||||| |||    
T  25647942 aaaacgatatccaaccatccatcatcactactcacccccaaataaaaacacccctaaaaaataacccccacttcctgagcaccaaaactgagccacgtcc 25647843  T
Q  231 gaaaagctcatatccgaaagaccaattagcttccaccacctct 273  Q
    |||||||||||| |||||||| || | | ||| ||||||||||    
T  25647842 gaaaagctcataaccgaaagatcattcaactttcaccacctct 25647800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 14194183 - 14194054
Alignment:
Q  138 atatccaaccacccatcgtcactactcaccccaaag-aaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaag 236  Q
    ||||||||||| |||||||||||||||||||||||  ||||||| || | |||| |||   |  | ||||||  |||||||||||||||| |||||||||    
T  14194183 atatccaaccatccatcgtcactactcaccccaaaataaaaacacccttaaaaaataacccccacttcctgagaaccaaaactgagccacgtccgaaaag 14194084  T
Q  237 ctcatatccgaaagaccaattagcttccac 266  Q
    ||| || ||||||||| | | |||||||||    
T  14194083 ctcctaaccgaaagacaattcagcttccac 14194054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 271
Target Start/End: Complemental strand, 37123672 - 37123497
Alignment:
Q  98 taaaacagacttattcatggaaacgaccactgttaaaaccatatcca--accacccatcgtcactactcacc-ccaaagaaaaacatccatcaaaattaa 194  Q
    ||||| |||||| |||| | ||||||||||||| ||||| |||||||  ||||||  | ||||||||||||| |||||||  |||| || || |||||||    
T  37123672 taaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccacctgttgtcactactcaccgccaaagatgaacacccctccaaattaa 37123573  T
Q  195 attcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacct 271  Q
    | || | |||| ||||| |||| ||||||||| | |||||||||||| || |||||| ||   ||||||||||||||    
T  37123572 actctcagtccagaacatcaaagctgagccacat-cgaaaagctcatgtctgaaagatcatacagcttccaccacct 37123497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 7105136 - 7105052
Alignment:
Q  94 cacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcca--accacccatcgtcactactcaccccaaagaaa 176  Q
    |||||||||||||||| |||| | |||| | |||| | |||||  ||||||  ||||||||||||||||||||||||||||||||    
T  7105136 cacctaaaacagacttcttcaagaaaacaagcactataaaaacagtatccaccaccacccatcgtcactactcaccccaaagaaa 7105052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 273
Target Start/End: Original strand, 39021122 - 39021244
Alignment:
Q  151 catcgtcactactcac-cccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccg-aa 248  Q
    |||||||||||||||| |||||||||| ||   | ||||||| ||| || | ||||| ||||||||| || |||||| |||||||| |||||||||| ||    
T  39021122 catcgtcactactcacacccaaagaaacacg--cgtcaaaatgaaactctcagtcctcaacaccaaagctaagccacatccgaaaaactcatatccgaaa 39021219  T
Q  249 agaccaattagcttccaccacctct 273  Q
    ||| |||| |||| |||||| ||||    
T  39021220 agatcaatcagctaccaccatctct 39021244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 4171042 - 4170963
Alignment:
Q  90 tcatcacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcacccc 169  Q
    ||||||||||||| |||||  |||| | ||| ||||| |||  |||  ||||||||||| ||||||||||||||||||||    
T  4171042 tcatcacctaaaatagactccttcacgaaaatgaccattgtataaatgatatccaaccatccatcgtcactactcacccc 4170963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 118 - 270
Target Start/End: Original strand, 24324609 - 24324761
Alignment:
Q  118 aaacgaccactgttaaaaccatatccaaccacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaa 216  Q
    ||||||||| ||| | ||| ||||||||||||| |||||||||||||||||| ||||||||||| || ||||||| ||| || |||||||||||||||||    
T  24324609 aaacgaccattgtaagaacgatatccaaccacc-atcgtcactactcacccctaaagaaaaacacccctcaaaataaaactctccgtcctgaacaccaaa 24324707  T
Q  217 actgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacc 270  Q
     |||||||||  ||||||||||| || |||||||| || | |||||||||||||    
T  24324708 gctgagccacagccgaaaagctcctaaccgaaagatcattcagcttccaccacc 24324761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 273
Target Start/End: Complemental strand, 8745426 - 8745267
Alignment:
Q  117 gaaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacacc 213  Q
    |||||||||| ||  ||||| |||||||||  || || ||||||||||||||||| ||||||||||| || ||||||||||| || | ||| ||||||||    
T  8745426 gaaacgaccaatgaaaaaacaatatccaacaccatccttcgtcactactcacccccaaagaaaaacacccctcaaaattaaactcccagtcttgaacacc 8745327  T
Q  214 aaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 273  Q
    ||| ||||||||| |||||||||||| |||| |||||| ||   ||||||||| ||||||    
T  8745326 aaagctgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctct 8745267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 153 - 280
Target Start/End: Complemental strand, 3478583 - 3478459
Alignment:
Q  153 tcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagac 252  Q
    |||||||||||||||||||||||   ||  | ||||||||||| || | ||||| ||||||||| || ||||| ||| |||||| ||| ||||||||||     
T  3478583 tcgtcactactcaccccaaagaa---cactcctcaaaattaaactcccagtcctcaacaccaaagcttagccaactcagaaaagttcacatccgaaagat 3478487  T
Q  253 caattagcttccaccacctctggatctc 280  Q
    || | ||||||| |||||||| ||||||    
T  3478486 cattcagcttccgccacctctcgatctc 3478459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 273
Target Start/End: Original strand, 6716547 - 6716704
Alignment:
Q  118 aaacgaccactgttaaaaccatatc-ca-accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaa 215  Q
    ||||||||||||| |||||  |||| || ||||||||| ||||||||||||||| ||  ||| || ||  |||||||||| || |  |||| ||||||||    
T  6716547 aaacgaccactgtaaaaacggtatctcacaccacccattgtcactactcacccccaacgaaa-caccccacaaaattaaactcccattcctcaacaccaa 6716645  T
Q  216 aactgagccacctccgaaaagctcatatccgaaa-gaccaattagcttccaccacctct 273  Q
    | ||||||||| |||| |||  || ||||||||| || |||| ||||||||||||||||    
T  6716646 agctgagccacatccggaaaaatcttatccgaaaagatcaatcagcttccaccacctct 6716704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 96 - 273
Target Start/End: Original strand, 10173368 - 10173544
Alignment:
Q  96 cctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcaccccaaagaaaaacatccatcaaaatta 193  Q
    |||||||||||| | |||||| ||||||| ||||| ||||| |||| ||||  ||| ||||||||||||||||||||||||| |   ||| |||||||||    
T  10173368 cctaaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtcactactcaccccaaagaatac--tcc-tcaaaatta 10173464  T
Q  194 aattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 273  Q
    || || | ||||| ||||||||| ||||||||| |||||||||||||||| | ||||| || | | ||||||||||||||    
T  10173465 aactctcagtcctcaacaccaaagctgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctct 10173544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 273
Target Start/End: Original strand, 37770480 - 37770609
Alignment:
Q  145 accacccatcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatat 243  Q
    ||||||| |||||||||||| |||| |||||||||   || ||||||||||| || | | ||||||||||||| | |||||||||| |||||||||||||    
T  37770480 accacccgtcgtcactactcgcccccaaagaaaaaaccccctcaaaattaaactcacagacctgaacaccaaagccgagccacctcagaaaagctcatat 37770579  T
Q  244 ccgaaagaccaattagcttccaccacctct 273  Q
    | |||||| || | |||||||| |||||||    
T  37770580 ctgaaagatcattcagcttccaacacctct 37770609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 87 - 272
Target Start/End: Complemental strand, 7696263 - 7696077
Alignment:
Q  87 acatcatcacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcac-cccaaagaaaaacatccat 185  Q
    |||||| ||||||||| | |||  |||| | ||||||||| ||| ||||  |||| ||||||| |||||||||||||||| |||  ||||||||| || |    
T  7696263 acatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaaatgatattcaaccactcatcgtcactactcactcccttagaaaaacacccct 7696164  T
Q  186 caaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctc 272  Q
     ||||| ||| ||   |||||||||||||||  |||||||| |||  ||| ||| ||||||||||| || | |||||||||||||||    
T  7696163 aaaaataaaactcctggtcctgaacaccaaagttgagccacatcctcaaatctcctatccgaaagatcattcagcttccaccacctc 7696077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 12343112 - 12343037
Alignment:
Q  94 cacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcacccc 169  Q
    |||||||||||||||  |||| | |||||||| |||| ||||| |||||||||||| |||||||||||||||||||    
T  12343112 cacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatccaaccactcatcgtcactactcacccc 12343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 145 - 273
Target Start/End: Original strand, 16952223 - 16952349
Alignment:
Q  145 accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatc 244  Q
    ||||| ||||||||||||||||||| ||  | |||| || || |||| ||| || | ||||| |||||||||  ||| |||| |||||||||||| ||||    
T  16952223 accactcatcgtcactactcacccccaa--agaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatc 16952320  T
Q  245 cgaaagaccaattagcttccaccacctct 273  Q
    ||||||| |  ||||||||||||||||||    
T  16952321 cgaaagatcgtttagcttccaccacctct 16952349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 145 - 273
Target Start/End: Original strand, 17022888 - 17023014
Alignment:
Q  145 accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatc 244  Q
    ||||| ||||||||||||||||||| ||  | |||| || || |||| ||| || | ||||| |||||||||  ||| |||| |||||||||||| ||||    
T  17022888 accactcatcgtcactactcacccccaa--agaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatc 17022985  T
Q  245 cgaaagaccaattagcttccaccacctct 273  Q
    ||||||| |  ||||||||||||||||||    
T  17022986 cgaaagatcgtttagcttccaccacctct 17023014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 145 - 273
Target Start/End: Original strand, 17060194 - 17060320
Alignment:
Q  145 accacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatc 244  Q
    ||||| ||||||||||||||||||| ||  | |||| || || |||| ||| || | ||||| |||||||||  ||| |||| |||||||||||| ||||    
T  17060194 accactcatcgtcactactcacccccaa--agaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatc 17060291  T
Q  245 cgaaagaccaattagcttccaccacctct 273  Q
    ||||||| |  ||||||||||||||||||    
T  17060292 cgaaagatcgtttagcttccaccacctct 17060320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 1269780 - 1269696
Alignment:
Q  87 acatcatcacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccccaa 171  Q
    |||||| ||||||||||| | |  |||  |||||||||| || | ||||| ||||||||||||||||||||||||||| ||||||    
T  1269780 acatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatccaaccacccatcgtcactactcgccccaa 1269696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 7874534 - 7874502
Alignment:
Q  143 caaccacccatcgtcactactcaccccaaagaa 175  Q
    |||||||||||||||||||||||||||||||||    
T  7874534 caaccacccatcgtcactactcaccccaaagaa 7874502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 4975039 - 4974990
Alignment:
Q  94 cacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcc 143  Q
    |||||||||||||||| |||| | ||||||||||||| ||||| ||||||    
T  4975039 cacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4974990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 4992947 - 4992898
Alignment:
Q  94 cacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcc 143  Q
    |||||||||||||||| |||| | ||||||||||||| ||||| ||||||    
T  4992947 cacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4992898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 273
Target Start/End: Original strand, 16832830 - 16832988
Alignment:
Q  118 aaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcaccccaaagaaaaa-catccatcaaaattaaattcgccgtcctgaacacca 214  Q
    |||||||| |||| ||||  |||||||||  ||||| |||||||||||||||||||||||||| || || ||||||||||| || | ||| |||||||||    
T  16832830 aaacgaccgctgtaaaaaagatatccaacaccacccgtcgtcactactcaccccaaagaaaaaacacccctcaaaattaaactcacagtcttgaacacca 16832929  T
Q  215 aaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 273  Q
    ||  |||||||| |||||||||||||||||| ||||| || | |||||| | |||||||    
T  16832930 aagttgagccacatccgaaaagctcatatcccaaagatcattcagcttcaatcacctct 16832988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 283
Target Start/End: Original strand, 41117749 - 41117944
Alignment:
Q  89 atcatcacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccccaa-agaaaaacatccatca 187  Q
    |||| |||||| |||||||| || || | |||| |||  ||| ||||| ||||||||||||||||||||| ||||||||||   ||||||||| || |||    
T  41117749 atcaccacctagaacagactcatgcacgaaaacaaccgttgtaaaaacgatatccaaccacccatcgtcattactcacccctttagaaaaacacccctca 41117848  T
Q  188 aaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctctggatctctga 283  Q
     ||| ||| || |  || ||||||||||| |||||||||||||| ||||||| ||| ||||||| || | |||||||||||||||| || ||||||    
T  41117849 gaataaaactcccgatcatgaacaccaaacctgagccacctccgcaaagctcctattcgaaagatcattcagcttccaccacctctcgacctctga 41117944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 272
Target Start/End: Complemental strand, 49528370 - 49528187
Alignment:
Q  90 tcatcacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactca-ccccaaagaaaaacatccatcaa 188  Q
    ||||||||||||| |||||  ||||||  | |||||||| ||||||| |||| |||||| ||||| |||||||||| ||||  ||||||||| || ||||    
T  49528370 tcatcacctaaaatagactccttcatgacaccgaccactattaaaacgatattcaaccatccatcttcactactcacccccttagaaaaacacccctcaa 49528271  T
Q  189 aattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctc 272  Q
    ||| ||| || | ||| ||||||||||| |||| |||| |||| ||||||  ||||||||||| || | | |||||||||||||    
T  49528270 aataaaactctcagtcttgaacaccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccaccacctc 49528187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 273
Target Start/End: Complemental strand, 48098606 - 48098447
Alignment:
Q  118 aaacgaccactgttaaaaccatatcca--accacccatcgtcactactcacccc-aaagaaaa-acatccatcaaaattaaattcgccgtcctgaacacc 213  Q
    ||||||||||||| ||||| |||||||  || |||| ||||||||||||||||| |||||||| ||| || | |||| |||| || | ||| | ||||||    
T  48098606 aaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaaaatacacccctaaaaaataaactcccagtcttaaacacc 48098507  T
Q  214 aaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 273  Q
    |||  |||||||| |||||||||||| |||| |||||| |  | | ||||||||||||||    
T  48098506 aaagttgagccacatccgaaaagctcctatctgaaagatcgttcatcttccaccacctct 48098447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 22810949 - 22811032
Alignment:
Q  96 cctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactca-ccccaaagaaaaa 178  Q
    |||||||||||||  |||| | || |||||||||| ||||| |||||| |||| |||||||||||||||| |||||||||||||    
T  22810949 cctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcctaccatccatcgtcactactcacccccaaagaaaaa 22811032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 268
Target Start/End: Complemental strand, 19673392 - 19673219
Alignment:
Q  95 acctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcaccccaaagaaaaacatccatcaaaatt 192  Q
    |||| |||||||| | |||| | ||| ||||||||| ||| | |||||||||  || || ||||||||||||||||| ||  | ||||  | ||||||||    
T  19673392 acctcaaacagacgtcttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcacccccaa--agaacactcctcaaaatt 19673295  T
Q  193 aaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccacca 268  Q
    ||| || | ||||| |||||||||  | |||||| ||||||||| |||||||| ||| | || |||||||||||||    
T  19673294 aaactctcagtcctcaacaccaaagtttagccacatccgaaaagttcatatccaaaatatcatttagcttccacca 19673219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 25753409 - 25753293
Alignment:
Q  151 catcgtcactactcacccc-aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaa 249  Q
    ||||||||||||||||||| ||||||||||| || ||||||||||| |  | |||||||||| ||||  ||| |||| ||| |||||||  | |||||||    
T  25753409 catcgtcactactcacccccaaagaaaaacacccctcaaaattaaactttcagtcctgaacatcaaagttgaaccacatccaaaaagcttctctccgaaa 25753310  T
Q  250 gaccaattagcttccac 266  Q
    || || | |||||||||    
T  25753309 gatcattcagcttccac 25753293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 273
Target Start/End: Original strand, 38637020 - 38637200
Alignment:
Q  94 cacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactca-ccccaaagaaaaacatccatcaaaatt 192  Q
    ||||||||||| |||  |||| | |||| ||| |||| ||||  |||||||||||||||||||||||||||| ||||  ||||||||| || | | | |     
T  38637020 cacctaaaacaaactccttcacgaaaacaaccgctgtaaaaatgatatccaaccacccatcgtcactactcacccccttagaaaaacaccccttatacta 38637119  T
Q  193 aaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 273  Q
    ||| || |  || |||||||||||  ||| || |||| | ||||||| |||| |||||| || | ||||||||||||||||    
T  38637120 aaactcccaatcttgaacaccaaagttgaaccgcctcggcaaagctcttatctgaaagatcattcagcttccaccacctct 38637200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 19815099 - 19815187
Alignment:
Q  185 tcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 273  Q
    |||| |||||| || | ||||| |||||||||  | |||||| || |||||| || ||||||||||| || ||||||||||||| ||||    
T  19815099 tcaagattaaactctcagtcctcaacaccaaagtttagccacatcggaaaagttcctatccgaaagatcatttagcttccaccatctct 19815187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 35341177 - 35341209
Alignment:
Q  143 caaccacccatcgtcactactcaccccaaagaa 175  Q
    |||||||||||||||||||||||||||| ||||    
T  35341177 caaccacccatcgtcactactcaccccagagaa 35341209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 87 - 273
Target Start/End: Original strand, 31290799 - 31290986
Alignment:
Q  87 acatcatcacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccc-caaagaaaaacatccat 185  Q
    |||||| |||||||| ||||||  |||  | ||||||||||||| ||||  ||| ||||||| ||||||||||||||||||| |||||||||||| || |    
T  31290799 acatcaccacctaaatcagactccttcgcgaaaacgaccactgtaaaaatgatagccaaccatccatcgtcactactcaccctcaaagaaaaacacccct 31290898  T
Q  186 caaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 273  Q
     |||| ||||     | ||  |||||||||| ||||||||| |||||||||||| ||||||||||| |||  | ||||||||||||||    
T  31290899 aaaaaataaacggctcatctagaacaccaaagctgagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctct 31290986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 9313121 - 9313236
Alignment:
Q  123 accactgttaaaaccatatccaa--ccacccatcgtcactactcacccc--aaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaac 218  Q
    |||| ||||||||| ||||||||  |||| ||||||| ||| |||||||  ||||||||||| || ||||||||||| || | |||||||| |||||| |    
T  9313121 accattgttaaaacgatatccaataccactcatcgtcgctaatcacccccaaaagaaaaacacccttcaaaattaaactcccagtcctgaa-accaaagc 9313219  T
Q  219 tgagccacctccgaaaa 235  Q
    |||||||| ||||||||    
T  9313220 tgagccacatccgaaaa 9313236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 6583118 - 6583183
Alignment:
Q  208 aacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 273  Q
    ||||||||| ||||||| | |||||||||||| |||| |||||| |||| ||||||||||||||||    
T  6583118 aacaccaaagctgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctct 6583183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 10785246 - 10785319
Alignment:
Q  92 atcacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactca 165  Q
    ||||| |||||||||||  |||| | |||||||  |||  ||||| ||||||||||||||||||||||||||||    
T  10785246 atcacttaaaacagactccttcacgaaaacgacatctgaaaaaacgatatccaaccacccatcgtcactactca 10785319  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 273
Target Start/End: Complemental strand, 34775170 - 34774985
Alignment:
Q  90 tcatcacctaaaacagacttattcatggaaacgaccactgttaaaaccatatcc--aaccacccatcgtcactactcaccccaaagaaaaacatccatca 187  Q
    |||||||||||||||||||  |||| | ||||||| ||||| ||||| | ||||   || |||| ||||||||||||||||||| |  ||||| || | |    
T  34775170 tcatcacctaaaacagactccttcacgaaaacgacaactgtaaaaacgaaatcccacactacccgtcgtcactactcaccccaatg--aaacacccgtaa 34775073  T
Q  188 aaattaaattcgccgtcctgaacaccaaaactgagccacctcc-gaaaagctcatatccgaaa-gaccaattagcttccaccacctct 273  Q
    ||| |||| || |  |||| ||||||||| ||||||||| ||| ||||| ||| |||| ||||  | |||| ||||||||||||||||    
T  34775072 aaaataaactcccaatcctcaacaccaaagctgagccacatccggaaaaactcctatctgaaacaatcaatcagcttccaccacctct 34774985  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 16147736 - 16147672
Alignment:
Q  209 acaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacctct 273  Q
    |||||||| ||||||||| ||||||||||||||||| |||||| || | | ||| ||||||||||    
T  16147736 acaccaaagctgagccacatccgaaaagctcatatctgaaagatcattcaactttcaccacctct 16147672  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 216
Target Start/End: Complemental strand, 4430962 - 4430862
Alignment:
Q  118 aaacgaccactgttaaaaccatatccaa--ccacccatcgtcactactcaccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaa 215  Q
    |||| ||||| || ||||| ||||||||  ||| || ||||| |||||||||||||||||||||| || || |||||||| || | | ||||| ||||||    
T  4430962 aaacaaccaccgtaaaaacgatatccaaaaccatccgtcgtcgctactcaccccaaagaaaaacacccctccaaattaaactccctggcctgagcaccaa 4430863  T
Q  216 a 216  Q
    |    
T  4430862 a 4430862  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 27102434 - 27102401
Alignment:
Q  145 accacccatcgtcactactcaccccaaagaaaaa 178  Q
    ||||| ||||||||||||||||||||||||||||    
T  27102434 accactcatcgtcactactcaccccaaagaaaaa 27102401  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 32882668 - 32882584
Alignment:
Q  87 acatcatcacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcacccc 169  Q
    |||||| | |||||||| ||||  |||| | |||||| |||||| || || |||||||||  |||||||||||||||||||||||    
T  32882668 acatcaccgcctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcacccc 32882584  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 46768421 - 46768340
Alignment:
Q  149 cccatcgtcactactca-ccccaaagaaaaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctc 229  Q
    ||||||||||||||||| ||||||||||||| | || |||| | |||| || |  |||||||||||||| || |||||||||    
T  46768421 cccatcgtcactactcacccccaaagaaaaaaaaccctcaagactaaactcccaatcctgaacaccaaagctaagccacctc 46768340  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 169
Target Start/End: Original strand, 41126271 - 41126353
Alignment:
Q  89 atcatcacctaaaacagacttattcatggaaacga-ccactgttaaaaccatatcca--accacccatcgtcactactcacccc 169  Q
    |||| ||||||||||||||  ||||| | |||| | ||||||| ||||| |||||||  |||||||||||||||||||||||||    
T  41126271 atcaccacctaaaacagacgcattcacgaaaacaaaccactgt-aaaacgatatccatcaccacccatcgtcactactcacccc 41126353  T

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Target: scaffold0050 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 269
Target Start/End: Complemental strand, 37001 - 36827
Alignment:
Q  94 cacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactca-ccccaaagaaaaacatccatcaaaatt 192  Q
    |||||||||||||||  |||| | |||| |||||||| ||||| | ||||||||| ||| |||||||||||| ||||||||||||||| || | |||| |    
T  37001 cacctaaaacagactccttcacg-aaaccaccactgtaaaaacgacatccaaccatccaccgtcactactcacccccaaagaaaaacacccctaaaaaat 36903  T
Q  193 aaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccac 269  Q
     ||  | ||||||||||||||||| |||||||||   |||||||||| || ||||||||||| | | ||||||||||    
T  36902 -aaccccccgtcctgaacaccaaagctgagccacaatcgaaaagctcctaaccgaaagaccattcaacttccaccac 36827  T

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Target: scaffold0063 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 251
Target Start/End: Complemental strand, 58430 - 58263
Alignment:
Q  87 acatcatcacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaacc--acccatcgtcactactcac-cccaaagaaaaacatcc 183  Q
    |||||| |||| ||||||||||  |||| | ||||||||| ||| |||   |||||||||   |||| |||||||||||||| ||||||||| ||||  |    
T  58430 acatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaagaacaacactc 58331  T
Q  184 atcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaaga 251  Q
     ||||||||||| || | |||| |||||||||| ||||||||| | |||||||||| |||||||||||    
T  58330 ctcaaaattaaactctcagtcccgaacaccaaagctgagccacattcgaaaagctcttatccgaaaga 58263  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 118 - 251
Target Start/End: Original strand, 3880406 - 3880543
Alignment:
Q  118 aaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcacccc--aaagaaaaacatccatcaaaattaaattcgccgtcctgaacacc 213  Q
    ||||||||||| | ||||| |||||||||  || |  |||||||||||||||||  ||  ||||||| || ||||||||||| ||   ||| ||||||||    
T  3880406 aaacgaccactataaaaacgatatccaacaccatctgtcgtcactactcaccccctaagaaaaaacacccctcaaaattaaactccaagtcttgaacacc 3880505  T
Q  214 aaaactgagccacctccgaaaagctcatatccgaaaga 251  Q
    ||| ||||||||| ||| ||||||||||||||||||||    
T  3880506 aaagctgagccacatccaaaaagctcatatccgaaaga 3880543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 236
Target Start/End: Original strand, 10248353 - 10248497
Alignment:
Q  94 cacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaac--cacccatcgtcactactcaccccaaagaaaaacatccatcaaaat 191  Q
    ||||||||||| |||  |||| | ||||||||||||| ||||| | |||| ||  |||||||||||||||||||||||  |   ||||| || |||||||    
T  10248353 cacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcaccccccaacgaaacacccgtcaaaat 10248452  T
Q  192 taaattcgccgtcctgaacaccaaaactgagccacctccgaaaag 236  Q
    |||| ||   ||||| |||||||||  |||||||| |||||||||    
T  10248453 taaactctaagtcctcaacaccaaagttgagccacatccgaaaag 10248497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 17656872 - 17656967
Alignment:
Q  176 aaacatccatcaaaattaaattcgccgtcctgaacaccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccaccacct 271  Q
    ||||| || ||||||||||| || |  || |||||||||||  ||||||||||| ||||||||| |||  |||||| || | ||||||||||||||    
T  17656872 aaacacccctcaaaattaaactcccaatcatgaacaccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacct 17656967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 268
Target Start/End: Original strand, 8862505 - 8862563
Alignment:
Q  210 caccaaaactgagccacctccgaaaagctcatatccgaaagaccaattagcttccacca 268  Q
    ||||||| ||||||||| || |||||| |||||||||||||| || | |||||||||||    
T  8862505 caccaaagctgagccacatctgaaaagttcatatccgaaagatcattcagcttccacca 8862563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 41922 - 42006
Alignment:
Q  87 acatcatcacctaaaacagacttattcatggaaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccccaa 171  Q
    |||||| ||||||||||| | |  |||  |||||||||| || | ||||| ||||||||||||||||||||||||||| ||||||    
T  41922 acatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatccaaccacccatcgtcactactcgccccaa 42006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 19649 - 19596
Alignment:
Q  118 aaacgaccactgttaaaaccatatccaaccacccatcgtcactactcaccccaa 171  Q
    |||||||| || | ||||| |||||||||||| |||||||||||||| ||||||    
T  19649 aaacgacctctataaaaacgatatccaaccacacatcgtcactactcgccccaa 19596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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