View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_79 (Length: 377)

Name: NF0856_low_79
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_79
NF0856_low_79
[»] chr8 (5 HSPs)
chr8 (1-320)||(11401152-11401473)
chr8 (234-320)||(34173422-34173509)
chr8 (234-325)||(35504167-35504258)
chr8 (234-320)||(34514446-34514532)
chr8 (234-308)||(16782421-16782495)
[»] chr1 (7 HSPs)
chr1 (234-327)||(34690009-34690102)
chr1 (234-327)||(34694537-34694630)
chr1 (234-320)||(47370137-47370223)
chr1 (234-320)||(15390495-15390581)
chr1 (253-320)||(26764516-26764583)
chr1 (243-320)||(23238450-23238527)
chr1 (234-272)||(41725488-41725526)
[»] scaffold0289 (1 HSPs)
scaffold0289 (234-320)||(12262-12348)
[»] chr5 (3 HSPs)
chr5 (243-324)||(11774264-11774345)
chr5 (234-314)||(21239395-21239475)
chr5 (257-320)||(22472179-22472242)
[»] chr4 (4 HSPs)
chr4 (282-327)||(17554430-17554475)
chr4 (233-320)||(39503529-39503616)
chr4 (233-279)||(17056614-17056660)
chr4 (236-297)||(46381471-46381532)
[»] chr2 (1 HSPs)
chr2 (234-320)||(9008979-9009069)
[»] chr6 (2 HSPs)
chr6 (233-308)||(7080152-7080227)
chr6 (284-320)||(26606140-26606176)


Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 11401473 - 11401152
Alignment:
Q  1 cctgtcttgacataatattttgcaattaactgaaatttcttttgcacacgttggtgttgactaattgtgtatttcataaaattccatcagaacatcaagg 100  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  11401473 cctgtcttgacataatattttaaaattaactgaaatttcttttgcacacgttggtgttgactaattgtgtatttcataaaattccatcaaagcatcaagg 11401374  T
Q  101 tttcttttctattgaccagtgatcaatttctagttgctttaataaaatttatagtacaatgtggtattaggagggatttggtttccctccct--ttttat 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||    
T  11401373 tttcttttctattgaccagtgatcaatttctagttgctttaataaaatttatagtaaaatgtggtattaggagggattcggtttccctccctttttttat 11401274  T
Q  199 ttggttaacgcagataaatcattttatttttggcgtattcttctatggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatct 298  Q
    |||||||| ||||||| |||||||||||||||||||||| ||| || |  ||| || |||||||||||| ||||||||||||||||||||||||||||||    
T  11401273 ttggttaatgcagatagatcattttatttttggcgtatttttccatagatacaagatcaaataaatagtctttgaatacacttacatgaagagattatct 11401174  T
Q  299 tcaaaatatttgattatttttt 320  Q
    ||||||||||||||||||||||    
T  11401173 tcaaaatatttgattatttttt 11401152  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 320
Target Start/End: Original strand, 34173422 - 34173509
Alignment:
Q  234 tattcttctatggtcacag-gaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatttgattatttttt 320  Q
    |||||||| |||||||||  |||||||||||||| |||| || ||||| |||||||||||||||||| ||||||||| ||||||||||    
T  34173422 tattcttccatggtcacaaagaccaaataaatagcttttaaacacactcacatgaagagattatctttaaaatatttaattatttttt 34173509  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 325
Target Start/End: Original strand, 35504167 - 35504258
Alignment:
Q  234 tattcttctatggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatttgattattttttatcaa 325  Q
    |||||||||||| ||| |  || ||||||||||| |||| | ||||| ||||||||| |||||| ||||||||||| ||||||||| |||||    
T  35504167 tattcttctatgatcataaaactaaataaatagtctttggacacactcacatgaagatattatcatcaaaatatttaattatttttaatcaa 35504258  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 320
Target Start/End: Original strand, 34514446 - 34514532
Alignment:
Q  234 tattcttctatggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatttgattatttttt 320  Q
    ||||||||||| |||||| ||| ||||| ||||| |||| | ||| | |||||||||  ||||||| ||||||||| ||||||||||    
T  34514446 tattcttctatagtcacaagactaaatagatagtctttggacacattcacatgaagatgttatctttaaaatatttaattatttttt 34514532  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 16782495 - 16782421
Alignment:
Q  234 tattcttctatggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatt 308  Q
    ||||||| |||||||||| ||||||||||||||| |||| | | ||  |||| |||| |||||||| ||||||||    
T  16782495 tattcttttatggtcacaagaccaaataaatagtctttggacatacacacataaagatattatctttaaaatatt 16782421  T

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Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 327
Target Start/End: Original strand, 34690009 - 34690102
Alignment:
Q  234 tattcttctatggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatttgattattttttatcaatt 327  Q
    |||||||||||||||||| ||||||||||||| |  || || ||||||| |||||||||||||||| ||||||||| | |||||||||||||||    
T  34690009 tattcttctatggtcacaagaccaaataaataatcattaaacacacttatatgaagagattatctttaaaatatttaaatattttttatcaatt 34690102  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 327
Target Start/End: Original strand, 34694537 - 34694630
Alignment:
Q  234 tattcttctatggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatttgattattttttatcaatt 327  Q
    |||||||||||||||||| ||||||||||||| |  || || ||||||| |||||||||||||||| ||||||||| | |||||||||||||||    
T  34694537 tattcttctatggtcacaagaccaaataaataatcattaaacacacttatatgaagagattatctttaaaatatttaaatattttttatcaatt 34694630  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 47370223 - 47370137
Alignment:
Q  234 tattcttctatggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatttgattatttttt 320  Q
    |||||||| ||| | ||| |||||||||||||| ||||  | ||||| |||||||||||||||||||||||||||| ||||||||||    
T  47370223 tattcttccatgattacaagaccaaataaatagcttttagacacactcacatgaagagattatcttcaaaatatttaattatttttt 47370137  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 15390581 - 15390495
Alignment:
Q  234 tattcttctatggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatttgattatttttt 320  Q
    |||||||| ||||||||| ||| ||||||||||| |||  | ||||| |||||||||||||| ||||||||||||  ||||||||||    
T  15390581 tattcttccatggtcacaagactaaataaatagtctttagacacactcacatgaagagattaacttcaaaatattaaattatttttt 15390495  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 26764516 - 26764583
Alignment:
Q  253 gaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatttgattatttttt 320  Q
    ||||||||||||||| |||| | ||||| ||||||||| |||||||| ||||||||| ||||||||||    
T  26764516 gaccaaataaatagtctttggacacactcacatgaagatattatctttaaaatatttaattatttttt 26764583  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 23238527 - 23238450
Alignment:
Q  243 atggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatttgattatttttt 320  Q
    ||||||||| ||||||||||||||| |||| | ||||| || | || | |||||||||||||||||| ||||||||||    
T  23238527 atggtcacaagaccaaataaatagtctttggacacactcacgtaaatatattatcttcaaaatatttaattatttttt 23238450  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 41725488 - 41725526
Alignment:
Q  234 tattcttctatggtcacaggaccaaataaatagtttttg 272  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  41725488 tattcttctatggtcacaagaccaaataaatagtatttg 41725526  T

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Target: scaffold0289 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 234 - 320
Target Start/End: Original strand, 12262 - 12348
Alignment:
Q  234 tattcttctatggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatttgattatttttt 320  Q
    |||||||| ||||||||| |||||||||||||| ||||  | ||||| |||| |||| |||||||||||||||||| ||||||||||    
T  12262 tattcttcgatggtcacaagaccaaataaatagcttttagacacactcacattaagatattatcttcaaaatatttaattatttttt 12348  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 11774264 - 11774345
Alignment:
Q  243 atggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatttgattattttttatca 324  Q
    |||||||||  || |||||||||  ||||| ||| ||| |||| ||||||||||||| ||||||||| ||||||||||||||    
T  11774264 atggtcacaaaactaaataaataaattttggatatactcacataaagagattatctttaaaatatttaattattttttatca 11774345  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 21239475 - 21239395
Alignment:
Q  234 tattcttctatggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatttgatta 314  Q
    |||||||| ||||||||| ||||||||||||||| |||| | ||||| | |||||||  |||||||||| |||||| ||||    
T  21239475 tattcttccatggtcacaagaccaaataaatagtctttggacacactcaaatgaagaagttatcttcaagatatttaatta 21239395  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 22472242 - 22472179
Alignment:
Q  257 aaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatttgattatttttt 320  Q
    ||||||||||| |||  | ||||| ||||||||||||||| |||||||||||| ||||||||||    
T  22472242 aaataaatagtctttagacacactcacatgaagagattattttcaaaatatttaattatttttt 22472179  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 17554430 - 17554475
Alignment:
Q  282 acatgaagagattatcttcaaaatatttgattattttttatcaatt 327  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||    
T  17554430 acatgaagagattatctttaaaatatttaattattttttatcaatt 17554475  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 320
Target Start/End: Complemental strand, 39503616 - 39503529
Alignment:
Q  233 gtattcttctatggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatttgattatttttt 320  Q
    ||||||||||||||||||| ||| |||| |||||| |||||| |||   |||| || |||| ||||| ||||||||| ||| ||||||    
T  39503616 gtattcttctatggtcacaagactaaatcaatagtgtttgaacacatacacataaaaagatgatctttaaaatatttaattttttttt 39503529  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 17056614 - 17056660
Alignment:
Q  233 gtattcttctatggtcacaggaccaaataaatagtttttgaatacac 279  Q
    ||||||||| ||||||||| |||||||| |||||| |||||||||||    
T  17056614 gtattcttccatggtcacaagaccaaatcaatagtgtttgaatacac 17056660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 46381471 - 46381532
Alignment:
Q  236 ttcttctatggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatc 297  Q
    ||||||| | |||||| ||||||||||||||| |||||  |||| ||||| |||||||||||    
T  46381471 ttcttctttagtcacaagaccaaataaatagtgtttgagcacacatacataaagagattatc 46381532  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 320
Target Start/End: Original strand, 9008979 - 9009069
Alignment:
Q  234 tattcttctatggtcacaggaccaaataaatagtttttgaatacacttacatgaagagat----tatcttcaaaatatttgattatttttt 320  Q
    |||||||  ||||||||| |||||||||||||||||||| | ||| | |||| |||| ||    |||||||||||||||| ||||||||||    
T  9008979 tattctttcatggtcacaagaccaaataaatagtttttggacacattcacataaagatattatatatcttcaaaatatttaattatttttt 9009069  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 7080152 - 7080227
Alignment:
Q  233 gtattcttctatggtcacaggaccaaataaatagtttttgaatacacttacatgaagagattatcttcaaaatatt 308  Q
    ||||||||||||||||||| |||||||| |||| | |||| | ||||  |||| || ||||| |||||||||||||    
T  7080152 gtattcttctatggtcacatgaccaaatcaataatgtttggacacacacacataaaaagattctcttcaaaatatt 7080227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 26606140 - 26606176
Alignment:
Q  284 atgaagagattatcttcaaaatatttgattatttttt 320  Q
    |||||||||||||||||||||||||  ||||||||||    
T  26606140 atgaagagattatcttcaaaatattgaattatttttt 26606176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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