View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_8 (Length: 720)

Name: NF0856_low_8
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_8
NF0856_low_8
[»] chr3 (4 HSPs)
chr3 (78-720)||(33990189-33990831)
chr3 (630-660)||(1116401-1116431)
chr3 (626-663)||(4216083-4216120)
chr3 (608-661)||(35335587-35335640)
[»] chr4 (2 HSPs)
chr4 (604-646)||(7367535-7367577)
chr4 (609-657)||(43843634-43843682)
[»] chr5 (1 HSPs)
chr5 (628-664)||(6760514-6760550)
[»] chr1 (2 HSPs)
chr1 (604-664)||(3523373-3523433)
chr1 (615-657)||(52156777-52156819)
[»] chr7 (2 HSPs)
chr7 (592-647)||(41775203-41775258)
chr7 (626-664)||(438696-438734)
[»] chr8 (1 HSPs)
chr8 (592-646)||(14227192-14227246)
[»] chr6 (2 HSPs)
chr6 (629-662)||(4323114-4323147)
chr6 (619-656)||(32926315-32926352)


Alignment Details
Target: chr3 (Bit Score: 586; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 78 - 720
Target Start/End: Original strand, 33990189 - 33990831
Alignment:
Q  78 agctgttgctcctaccaaacatgcaaaaggtattatatatacttcacattttcctagctctatctatgatcnnnnnnngtgtgcaaatatttcatcttgc 177  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  33990189 agctattgctcctaccaaacatgcaaaaggtattatatatacttcacattttcctagctctatctatgatctttttttgtgtgcaaatatttcatcttgc 33990288  T
Q  178 agattatataaaaacagttgacatttttgagaactgtggttgaaccaattttggtatctgcaccctcctaactgttgtttactgtgttttatgattgtag 277  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33990289 agattatacaaaaacagttgacatttttgagaactgtggttgaaccaattttggtatctgcaccctcctaactgttgtttactatgttttatgattgtag 33990388  T
Q  278 agcacctgctgcatcaccggttctgccaggcaaagccttcttcattaagagaggtgcccttaaaaattcacaaacatgcatgcatggatgcatttagatc 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990389 agcacctgctgcatcaccggttctgccaggcaaagccttcttcattaagagaggtgcccttaaaaattcacaaacatgcatgcatggatgcatttagatc 33990488  T
Q  378 cactgtttgaactttagtatttttctttcttgtgatatgcatgtgttttttgtggatagtttatttgtctgatggttctttcttttgcatgtattggaat 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  33990489 cactgtttgaactttagtatttttctttcttgtgatatgcatgtgttttttgtggatattttatttgtctgatggttctttcttttgcatgttttggaat 33990588  T
Q  478 tttgtacttttacatagttgagtccaagaagaagttttggtgctgcaagtaaacctcaaggtgagattgtttggctaaacaacatgattgacatatgtat 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33990589 tttgtacttttacatagttgagtccaagaagaagttttggtgctgcaagtaaacctcaaggtgagattgtttggctaaacaacatgattgacatatgtat 33990688  T
Q  578 ttatgaagcaccagcacagacactggacacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaaaccattggtcagt 677  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  33990689 ttatgaagcaccagcacatacactggacacgacactaacacatagacgccaataataatttgagaaaattgaagtgcttaaatgtaaaccatgggtcagt 33990788  T
Q  678 gtcatacaccagaatccagatatgttcagtgttatccgataat 720  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  33990789 gtcatacaccagaatccagatatgttcagtgttatctgataat 33990831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 630 - 660
Target Start/End: Original strand, 1116401 - 1116431
Alignment:
Q  630 taataatttgagaaaattgaagtgattaaat 660  Q
    |||||||||||||||||||||||||||||||    
T  1116401 taataatttgagaaaattgaagtgattaaat 1116431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 663
Target Start/End: Complemental strand, 4216120 - 4216083
Alignment:
Q  626 ccaataataatttgagaaaattgaagtgattaaatgta 663  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  4216120 ccaataataattaaagaaaattgaagtgattaaatgta 4216083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 661
Target Start/End: Original strand, 35335587 - 35335640
Alignment:
Q  608 gacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatg 661  Q
    |||||| |||||||||| | | |||||||||||||||||  |||||||||||||    
T  35335587 gacactgacacatagacactagtaataatttgagaaaatgaaagtgattaaatg 35335640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 604 - 646
Target Start/End: Original strand, 7367535 - 7367577
Alignment:
Q  604 acacgacactaacacatagacgccaataataatttgagaaaat 646  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  7367535 acacgacactaacacatagacaccaataataatttgagaaaat 7367577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 609 - 657
Target Start/End: Complemental strand, 43843682 - 43843634
Alignment:
Q  609 acactaacacatagacgccaataataatttgagaaaattgaagtgatta 657  Q
    |||||||||| ||||| |||||||||||||||||||||  |||||||||    
T  43843682 acactaacacgtagacaccaataataatttgagaaaataaaagtgatta 43843634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 628 - 664
Target Start/End: Complemental strand, 6760550 - 6760514
Alignment:
Q  628 aataataatttgagaaaattgaagtgattaaatgtaa 664  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6760550 aataataatttgagaaaatttaagtgattaaatgtaa 6760514  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 604 - 664
Target Start/End: Original strand, 3523373 - 3523433
Alignment:
Q  604 acacgacactaacacatagacgccaataataatttgagaaaattgaagtgattaaatgtaa 664  Q
    |||||||||| |||| ||||| || |||||||||||| ||||| ||||||||| |||||||    
T  3523373 acacgacactgacacgtagacaccgataataatttgataaaatagaagtgattgaatgtaa 3523433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 615 - 657
Target Start/End: Complemental strand, 52156819 - 52156777
Alignment:
Q  615 acacatagacgccaataataatttgagaaaattgaagtgatta 657  Q
    |||||||||||| |||||||| |||||||||| ||||||||||    
T  52156819 acacatagacgctaataataacttgagaaaatggaagtgatta 52156777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 647
Target Start/End: Original strand, 41775203 - 41775258
Alignment:
Q  592 cacagacactggacacgacactaacacatagacgccaataataatttgagaaaatt 647  Q
    ||||||||| |||||||||||||| |||| | | || |||||||||||||||||||    
T  41775203 cacagacaccggacacgacactaagacatggccaccgataataatttgagaaaatt 41775258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 626 - 664
Target Start/End: Complemental strand, 438734 - 438696
Alignment:
Q  626 ccaataataatttgagaaaattgaagtgattaaatgtaa 664  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  438734 ccaataataatttaagaaaattgaagtaattaaatgtaa 438696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 646
Target Start/End: Original strand, 14227192 - 14227246
Alignment:
Q  592 cacagacactggacacgacactaacacatagacgccaataataatttgagaaaat 646  Q
    ||||||||||||||||| |||| |||| |  || |||||||||||||||||||||    
T  14227192 cacagacactggacacgtcactgacacgtcaacaccaataataatttgagaaaat 14227246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 662
Target Start/End: Original strand, 4323114 - 4323147
Alignment:
Q  629 ataataatttgagaaaattgaagtgattaaatgt 662  Q
    |||| |||||||||||||||||||||||||||||    
T  4323114 ataacaatttgagaaaattgaagtgattaaatgt 4323147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 656
Target Start/End: Complemental strand, 32926352 - 32926315
Alignment:
Q  619 atagacgccaataataatttgagaaaattgaagtgatt 656  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  32926352 atagacaccaataataatttaagaaaattgaagtgatt 32926315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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