View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_80 (Length: 377)
Name: NF0856_low_80
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 36440657 - 36440336
Alignment:
| Q |
1 |
cacacatgaactgtccatgaagaatcaagtcagatttctaacaaacagatttactaactatgtgcctctatctagagccacataagttccctaagaattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36440657 |
cacacatgaactgtccatgaagaatcaagtcagatttctaacaaacagatttactaactatgtgcctctatctagagccacataagttccctaagaattt |
36440558 |
T |
|
| Q |
101 |
aatatcatgcaactaccaaggtaccaatttttcaatttttagttgtatgtctcaatcacactcctttactcacaggacccatatataacaactcatgcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36440557 |
aatatcatgcaactaccaaggtaccaatttttcaatttttagttgtatgtctcaatcgcactcctttactcacaggacccatatataacaactcatgcat |
36440458 |
T |
|
| Q |
201 |
attcatccccagatcagcacgcattctcatcattaatgataaaagtaactcaaattcaacttgttcatttctaatccttttcactcatcaaatgctattc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36440457 |
attcatccccagatcagcacgcattctcatcattaatgataaaagtaactcaaattcaacttgttcatttctaatccttttcactcatcaaatgctattc |
36440358 |
T |
|
| Q |
301 |
ataacaccatgaaagaggttcc |
322 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
36440357 |
ataacaccatgaaagaggttcc |
36440336 |
T |
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