View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_82 (Length: 372)
Name: NF0856_low_82
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_82 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 22215148 - 22215512
Alignment:
| Q |
1 |
aatggtcgatgttatcaaagggtgtcgtacagtttttaaagaaaaacctccacaaaagaaggaagatccaggatggtttaacgtacctgttacgatcaag |
100 |
Q |
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| T |
22215148 |
aatggtcgatgttatcaaagggtgtcgtacagtttttaaagaaaaacctccacaaaagaaggaagatccaggatggtttaacatacctgttacgatcaag |
22215247 |
T |
|
| Q |
101 |
gatttatatctgggagaagtgatgtgcgacctcgtatcaggcgcaaacatgatgtcactgtcactttttaagaaaatttgagggttagaacttaatccat |
200 |
Q |
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| T |
22215248 |
gaattttatctgggagaagtgatgtgcgacctcgtatcaagcgcaaacatgatgtcactgtcactttttaagaaaatttgagggttagaacttaatccat |
22215347 |
T |
|
| Q |
201 |
gtgaaataagaatataacttgttattggttcaagcaaatgtgttgaaggtgtggtagagaatgtggatagaatcacttttcctatcgaagtagttgtcat |
300 |
Q |
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| T |
22215348 |
gtgaaataagaatatgacttgttattggttcaagcaaatgtgttgaaggtgtggtagagaatgtggatagaatcacttttcctatcgaagtagttgtcat |
22215447 |
T |
|
| Q |
301 |
ggagatgcaaaaggcactgagaagtttcagatgatctaggagaccttttctcgcaacagctagggct |
367 |
Q |
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| T |
22215448 |
ggagatgc--aaggcactgagaagtttcagatgatctaggagaccttttctcgccacaaccagggct |
22215512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 26166977 - 26166902
Alignment:
| Q |
98 |
aaggatttatatctgggagaagtgatgtgcgacctcgtatcaggcgcaaacatgatgtcactgtcactttttaagaa |
174 |
Q |
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| T |
26166977 |
aaggatttttatttaggagaagtgatacgcgacctcagatcaagcgcaaacat-atgtcactgtcaatttttaagaa |
26166902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 28923601 - 28923549
Alignment:
| Q |
116 |
gaagtgatgtgcgacctcgtatcaggcgcaaacatgatgtcactgtcactttt |
168 |
Q |
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||||| ||||| ||||||||||| ||| ||||||||||||||| |||||||| |
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| T |
28923601 |
gaagtaatgtgtgacctcgtatccagcgtaaacatgatgtcactatcactttt |
28923549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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