View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_84 (Length: 369)
Name: NF0856_low_84
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_84 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 5 - 340
Target Start/End: Complemental strand, 11151642 - 11151310
Alignment:
| Q |
5 |
tgtcgaagaatatatttacaagcaccgaacatcagtatagctctaggcttgccttcaattttcacattgttcatattatacaatccgaaatatggtttgg |
104 |
Q |
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| T |
11151642 |
tgtcgaaccatatatttacaagcaccgaacatcggtatagctctaggcttgccttcaattttcacattgttcatattatacaatccgaaatatggtttgg |
11151543 |
T |
|
| Q |
105 |
attctataatccaaataaagagtatctatgtaccacttgaatttgaatttttaacctcttcctgtttaaagtctgcatatcaaagctaaatgaattgaag |
204 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11151542 |
attctataattcaaataaagagtatctatgtaccacttgaatttgaatttttaacctcttcctgtttaaagtctgcatatcaaagctaaatgaattgaag |
11151443 |
T |
|
| Q |
205 |
aacttcaacaataatagtactataaatgtgaaattcaaaagcatatattctacagtttggttaattgttatccaggtaatgaaacagggtttcttctatg |
304 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11151442 |
aacttcaac---aatagtactataaatgtgaaattcaaaagcatatattctacagtttggttaattgttatccaggtaatgaaacagggtttcttctatg |
11151346 |
T |
|
| Q |
305 |
ttttttcatttgacattaattttatgtgcagtaatg |
340 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
11151345 |
ttttttcatttgacattaattttatgttcagtaatg |
11151310 |
T |
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