View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_low_85 (Length: 369)
Name: NF0856_low_85
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_85 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 161 - 316
Target Start/End: Original strand, 4027858 - 4028014
Alignment:
| Q |
161 |
gtgtgtatttaaaataccaaaattaaaccacgataaaaaa-tcatgttgaaccaacaactatacattaaagtttctaaaaagtattataatgttgtttga |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4027858 |
gtgtgtatttaaaataccaaaattaaaccacgataaaaaaatcacgttgaaccaacaactatacattaaagtttctaaaaagtattataatgttgtttga |
4027957 |
T |
|
| Q |
260 |
ttcatatatgtgactctaattagtgggataatacttaattgttgtcaaaacctataa |
316 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4027958 |
ttcatatatgtgattctaatcagtgggataaaacttaattgttgtcaaaacctataa |
4028014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 4027612 - 4027683
Alignment:
| Q |
30 |
agtgcaagaaaaaattattttcttcgtaagtttcttctcatagtagtgacaaaattagagaagatctcttga |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4027612 |
agtgcaagaaaaaattattttcttcgtaagtttcttctcatagtagtgacaaaattagagaagatctcttga |
4027683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2613 times since January 2019
Visitors: 6164