View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_86 (Length: 367)

Name: NF0856_low_86
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_86
NF0856_low_86
[»] chr8 (3 HSPs)
chr8 (29-354)||(9675126-9675451)
chr8 (56-216)||(9692286-9692446)
chr8 (279-354)||(9692149-9692225)
[»] chr3 (8 HSPs)
chr3 (80-188)||(46236374-46236482)
chr3 (79-173)||(47413795-47413889)
chr3 (79-180)||(46480222-46480323)
chr3 (79-184)||(16025907-16026012)
chr3 (93-184)||(46474366-46474457)
chr3 (79-184)||(51944319-51944424)
chr3 (76-184)||(5156671-5156779)
chr3 (96-180)||(46491152-46491236)
[»] chr4 (3 HSPs)
chr4 (70-218)||(35155829-35155978)
chr4 (56-229)||(35162835-35162997)
chr4 (283-340)||(35163037-35163094)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 29 - 354
Target Start/End: Complemental strand, 9675451 - 9675126
Alignment:
Q  29 agctgctacagccaatgctggaataggggccatgtgtgtgccaactggaatagactttctagccgatcaccctttcctttttctaattagagaagattcg 128  Q
    |||||||||||||||||||  |||||||| | |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  9675451 agctgctacagccaatgctaaaataggggtcttgtgtgcgccaactggaatagactttatagccgatcaccctttcctatttctaattagagaagattcg 9675352  T
Q  129 acccaaacaatcatctttgccggacaggttctcaatcctcttgttgggtgatcttaacttctcaaaccgcaatcaattgcatcactcatagaaagcgagg 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9675351 acccaaacaatcatctttgccggacaggttctcaatcctcttgttgggtgatcttaacttctcaaaccgcaatcaattgcatcactcatagaaagcgagg 9675252  T
Q  229 ggagctcattattatttttt--ttgaaaggaatgcannnnnnnnnnaataagagatagtttagtgtttgtgacatgatctaattgtgggacaaatagatt 326  Q
    ||||||||||||| ||||||  ||||||||||||||          |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9675251 ggagctcattattttttttttgttgaaaggaatgca--ttttttttaataagagatagtttagtgtttctgacatgatctaattgtgggacaaatagatt 9675154  T
Q  327 aagattatcttagtttttatgttatttc 354  Q
    ||||||||||||||||||||||||||||    
T  9675153 aagattatcttagtttttatgttatttc 9675126  T

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Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 9692446 - 9692286
Alignment:
Q  56 ggccatgtgtgtgccaactggaatagactttctagccgatcaccctttcctttttctaattagagaagattcgacccaaacaatcatctttgccggacag 155  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  9692446 ggccatgtgtatgccaactggaatagactttatagccgatcaccctttcctatttctaattagagaagatttgacccaaacgatcatctttgccggacag 9692347  T
Q  156 gttctcaatcctcttgttgggtgatcttaacttctcaaaccgcaatcaattgcatcactca 216  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  9692346 gttctcaatcctcttgttgggtgatcttaacttctcgtaccgcaatcaattgcatcactca 9692286  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 354
Target Start/End: Complemental strand, 9692225 - 9692149
Alignment:
Q  279 agatagtttagtgtttgtgacatgatctaattgtgggacaaatagattaagattatc-ttagtttttatgttatttc 354  Q
    |||||||||||||||| ||| |||||| |||||| ||| ||||| |||||||||||| |||||  ||||||||||||    
T  9692225 agatagtttagtgtttctgatatgatccaattgtaggaaaaatatattaagattatctttagtggttatgttatttc 9692149  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 80 - 188
Target Start/End: Complemental strand, 46236482 - 46236374
Alignment:
Q  80 agactttctagccgatcaccctttcctttttctaattagagaagattcgacccaaacaatcatctttgccggacaggttctcaatcctcttgttgggtga 179  Q
    ||||||| |||| |||||||||||||| |||||||||||||||| |||||||  ||||||| ||||||| |||||||| ||||||||| ||||||| |||    
T  46236482 agactttgtagctgatcaccctttcctatttctaattagagaagtttcgaccggaacaatcctctttgctggacaggtgctcaatcctgttgttggatga 46236383  T
Q  180 tcttaactt 188  Q
    |||||||||    
T  46236382 tcttaactt 46236374  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 47413889 - 47413795
Alignment:
Q  79 tagactttctagccgatcaccctttcctttttctaattagagaagattcgacccaaacaatcatctttgccggacaggttctcaatcctcttgtt 173  Q
    |||||||| ||||||| ||||||||| | |||||||||||||||||||| ||| |||||||| ||||||  ||||| || |||||||||||||||    
T  47413889 tagactttgtagccgaccaccctttcttatttctaattagagaagattcaaccgaaacaatcctctttgttggacatgtgctcaatcctcttgtt 47413795  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 46480222 - 46480323
Alignment:
Q  79 tagactttctagccgatcaccctttcctttttctaattagagaagattcgacccaaacaatcatctttgccggacaggttctcaatcctcttgttgggtg 178  Q
    |||||||| |||| || ||||||||| | ||| | ||||||||||| | ||||  ||||||||||||||  |||||||| ||||||||||||| ||||||    
T  46480222 tagactttgtagctgaccaccctttcttatttatgattagagaagacttgaccggaacaatcatctttgttggacaggtgctcaatcctcttgctgggtg 46480321  T
Q  179 at 180  Q
    ||    
T  46480322 at 46480323  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 16025907 - 16026012
Alignment:
Q  79 tagactttctagccgatcaccctttcctttttctaattagagaagattcgacccaaacaatcatctttgccggacaggttctcaatcctcttgttgggtg 178  Q
    |||| ||| |||| || ||||||||| | |||||||||||||||||||  ||| |||||||| ||||||  || || || ||||||||| |||||| |||    
T  16025907 tagattttgtagctgaccaccctttcttatttctaattagagaagatttaaccgaaacaatcctctttgtagggcaagtactcaatccttttgttgagtg 16026006  T
Q  179 atctta 184  Q
    ||||||    
T  16026007 atctta 16026012  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 46474366 - 46474457
Alignment:
Q  93 gatcaccctttcctttttctaattagagaagattcgacccaaacaatcatctttgccggacaggttctcaatcctcttgttgggtgatctta 184  Q
    |||||||| ||| | | |||||||||||| |||| | ||  ||||||||||||||  |||||||| || |||||||||| ||||||||||||    
T  46474366 gatcacccattcttatatctaattagagatgatttggccggaacaatcatctttgttggacaggtgcttaatcctcttgatgggtgatctta 46474457  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 51944319 - 51944424
Alignment:
Q  79 tagactttctagccgatcaccctttcctttttctaattagagaagattcgacccaaacaatcatctttgccggacaggttctcaatcctcttgttgggtg 178  Q
    |||||||| |||| || ||||||||| | ||||| ||||||||||||| |||   ||||||||||||||  |||||||| ||||| || |||   |||||    
T  51944319 tagactttgtagctgaccaccctttcttatttctgattagagaagatttgactggaacaatcatctttgttggacaggtgctcaacccacttaccgggtg 51944418  T
Q  179 atctta 184  Q
    ||||||    
T  51944419 atctta 51944424  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 5156671 - 5156779
Alignment:
Q  76 gaatagactttctagccgatcaccctttcctttttctaattagagaagattcgacccaaacaatcatctttgccggacaggttctcaatcctcttgttgg 175  Q
    ||||||||||| |||| |||||||||||| | ||||||||||||||| | |||||   ||| ||  ||||||  ||||| || |||||||| |||| ||     
T  5156671 gaatagactttgtagctgatcaccctttcttatttctaattagagaaaactcgactggaaccattctctttgttggacaagtgctcaatccacttgatga 5156770  T
Q  176 gtgatctta 184  Q
    |||||||||    
T  5156771 gtgatctta 5156779  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 46491152 - 46491236
Alignment:
Q  96 caccctttcctttttctaattagagaagattcgacccaaacaatcatctttgccggacaggttctcaatcctcttgttgggtgat 180  Q
    ||||||||| | ||| | ||||||||||| | |||   ||||||||||||||  ||||||||  |||||||||||| ||||||||    
T  46491152 caccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtgat 46491236  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 35155829 - 35155978
Alignment:
Q  70 caactggaatagactttctagccgatcaccctttcctttttctaattagagaagattcgacccaaacaatcatctttgccggacaggttctcaatcctc- 168  Q
    |||| ||| |||||||| |||| |||||||||||| | ||| ||||||||||||||| ||||||||||||| ||||||||||||| ||  |||| ||||     
T  35155829 caaccggactagactttatagctgatcaccctttcttatttttaattagagaagatttgacccaaacaatcctctttgccggacaagtgttcaaccctct 35155928  T
Q  169 ttgttgggtgatcttaacttctcaaaccgcaatcaattgcatcactcata 218  Q
    ||| |  |||||||||| |||  ||||||||||||||||||||| |||||    
T  35155929 ttgctaagtgatcttaatttccgaaaccgcaatcaattgcatcaatcata 35155978  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 56 - 229
Target Start/End: Original strand, 35162835 - 35162997
Alignment:
Q  56 ggccatgtgtgtgccaactggaatagactttctagccgatcaccctttcctttttctaattagagaagattcgacccaaacaatcatctttgccggacag 155  Q
    ||||| |||| | ||||| ||| |||||||| |||| ||||| |||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||     
T  35162835 ggccaagtgtattccaaccggagtagactttatagctgatcatcctttcttatttctaattagagaagattcgacccaaacaatcctctttgcgggacaa 35162934  T
Q  156 gttctcaatcctcttgttgggtgatcttaacttctcaaaccgcaatcaattgcatcactcatagaaagcgaggg 229  Q
    || |||||            |||||| |||| ||||||||||||||||||||||||| || |||| | ||||||    
T  35162935 gtgctcaaa-----------gtgatcataacatctcaaaccgcaatcaattgcatcattcgtagataacgaggg 35162997  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 35163037 - 35163094
Alignment:
Q  283 agtttagtgtttgtgacatgatctaattgtgggacaaatagattaagattatcttagt 340  Q
    |||||| | ||| ||| ||||||| | |||||||| ||||||||||||||||||||||    
T  35163037 agtttactctttttgatatgatctgagtgtgggacgaatagattaagattatcttagt 35163094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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