View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_88 (Length: 364)
Name: NF0856_low_88
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_88 |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 136 - 312
Target Start/End: Original strand, 34380788 - 34380964
Alignment:
| Q |
136 |
gcagtagccactcttttttggacaactccaactttggtttctgttttcacttttggggcatgtatattggtgaagactgagctaactgcagcaacagtcc |
235 |
Q |
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| T |
34380788 |
gcagtagccacgctattttgggcatctccaactttggtttctgttttcacttttggagcttgtatattggtgaaaaccgagctaactgcagccacagtcc |
34380887 |
T |
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| Q |
236 |
tctcagctcttgcaacattccgaattctacaagaaccaatttgcaatatgcctgagcttatatccatgattactcaa |
312 |
Q |
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| T |
34380888 |
tctcggctcttgcaacatttcgtattttgcaagaaccgatttacaatttgcctgaacttatttccatgataactcaa |
34380964 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 346
Target Start/End: Original strand, 11632298 - 11632333
Alignment:
| Q |
311 |
aatagaaaagttaagagatgaagccattgagattga |
346 |
Q |
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| T |
11632298 |
aatagaaaagttaagagatgaagccattgagattga |
11632333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 34380663 - 34380729
Alignment:
| Q |
11 |
cagagaccatcaagaacatgggaattttgaagttgcattcatgggaattaacattcatgcagaaact |
77 |
Q |
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| T |
34380663 |
cagagacaatgaagaacattagaattttaaagttgcattcatgggaatcgacatttctgcagaaact |
34380729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 39748733 - 39748684
Alignment:
| Q |
311 |
aatagaaaagttaagagatgaagccattgagattgagaataaggtaatca |
360 |
Q |
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| T |
39748733 |
aatagaaaagttaagagatgaagccattgagattgagaataaggtaatca |
39748684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 350
Target Start/End: Original strand, 26978750 - 26978789
Alignment:
| Q |
311 |
aatagaaaagttaagagatgaagccattgagattgagaat |
350 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26978750 |
aatagaaaagttaagagatgaagccattgagattgagaat |
26978789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 350
Target Start/End: Original strand, 27020443 - 27020482
Alignment:
| Q |
311 |
aatagaaaagttaagagatgaagccattgagattgagaat |
350 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
27020443 |
aatagaaaagttaagagaggaagccattgagattgagaat |
27020482 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 346
Target Start/End: Complemental strand, 27087933 - 27087898
Alignment:
| Q |
311 |
aatagaaaagttaagagatgaagccattgagattga |
346 |
Q |
| |
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|
| T |
27087933 |
aatagaaaagttaagagatgaaaccattgagattga |
27087898 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 1959835 - 1959783
Alignment:
| Q |
308 |
ctcaatagaaaagttaagagatgaagccattgagattgagaataaggtaatca |
360 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1959835 |
ctcaatagaaaagttaagagatgaagccattgaaattgagaataaggtaatca |
1959783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 350
Target Start/End: Original strand, 34681145 - 34681184
Alignment:
| Q |
311 |
aatagaaaagttaagagatgaagccattgagattgagaat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34681145 |
aatagaaaagttaagagatgaagccattgagattgagaat |
34681184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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