View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_low_9 (Length: 710)

Name: NF0856_low_9
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_low_9
NF0856_low_9
[»] chr8 (1 HSPs)
chr8 (4-701)||(45461253-45461950)


Alignment Details
Target: chr8 (Bit Score: 653; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 4 - 701
Target Start/End: Complemental strand, 45461950 - 45461253
Alignment:
Q  4 tttatcaactttggcctcctcctagaattaattaatgagagacagacagacagcaaagtgaagaaatagttatagttatatagtacatatcataccaact 103  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45461950 tttatcaactttaacctcctcctagaattaattaatgagagacagacagacagcaaagtgaagaaatagttatagttatatagtacatatcataccaact 45461851  T
Q  104 tctacaagagcagcatgagggattttgagagcaaccggaggttcacgaccattcttttcaaagaaacgaaaaaccatgattaagaatctcttgagatagt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45461850 tctacaagagcagcatgagggattttgagagcaaccggaggttcacgaccattcttttcaaagaaacgaaaaaccatgattaagaatctcttgagatagt 45461751  T
Q  204 ttgagcaatcacgaaccactaaatgtgactgtcccaagaaataggcactaccactctcccttgcatcaattagttccaacagctccttcctcacagattc 303  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45461750 ttgagccatcacgaaccactaaatgtgactgtcccaagaaataggcactaccactctcccttgcatcaattagttccaacagctccttcctcacagattc 45461651  T
Q  304 tcccattttaggactactactagcaggaggcaacatgaaccgtacnnnnnnncttttgttgcaagagctactactcgccaacaacgtatgatcattttcc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| | |||||||||||||    
T  45461650 tcccattttaggactactactagcaggaggcaacatgaaccgtactttttttcttttgttgcaagagctactactcgccaacaatgcatgatcattttcc 45461551  T
Q  404 tcaattactgctgggctaatctgagcttcattagtaatgctaacttcattgcatgtttcatcattcatcaaagggactaatgcatttccatctgatgaat 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45461550 tcaattactgctgggctaatctgagcttcattagtaatgctaacttcattgcatgtttcatcattcatcaaagggactaatgcatttccatctgatgaat 45461451  T
Q  504 ttcccactatcatcattttttcttctgccgaaaccattgattcaatgtcactcatctgttcaatggaaatgaattctcctatagcaccaatgattttctc 603  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45461450 ttcccactatcatcattttttcttctgccgaaaccattgattcaatgtcactcatctgttcaatggaaatgaattctcctatagcaccgatgattttctc 45461351  T
Q  604 ctcaaaatcactcgtgtcccttatattattatcacaatatccatatctcacaatgcaacgatatattttataatattttggcccaatccttcctatga 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45461350 ctcaaaatcactcgtgtcccttatattattatcacaatatccatatctcacaatgcaacgatatattttataatattttggcccaatccttcctatga 45461253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1955 times since January 2019
Visitors: 6152