View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_low_95 (Length: 349)
Name: NF0856_low_95
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_95 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 151 - 336
Target Start/End: Complemental strand, 20914858 - 20914672
Alignment:
| Q |
151 |
gctggttgtgcgtgtggctgctacctggttaggcagcagattactgctatagctttggttactgcagagttgttt-gtttgtgcgcaactgttgggggtt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20914858 |
gctggttgtgcgtgtggctgctacctggttaggcagcagattactgctatagctttggatgctgcagagttgttttgtttgtgcgcaactgttgggggtt |
20914759 |
T |
|
| Q |
250 |
ctagagctgcagaattcgtggttgctggtgtgctttttgggggagtagctactgtgttctttttaactggtttttcggtttgttcct |
336 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20914758 |
ccagagctgcaaaattcgtggttgctggtgtgctttttgggggagcagctgctgtgttctttttaactggtttttcggtttgttcct |
20914672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 215 - 333
Target Start/End: Original strand, 6699086 - 6699203
Alignment:
| Q |
215 |
cagagttgtttgtttgtgcgcaactgttgggggttctagagctgcagaattcgtggttgctggtgtgctttttgggggagtagctactgtgttcttttta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |||| |||||||||||||| |
|
|
| T |
6699086 |
cagagttgtttgtttgtgcgcaactgttgggggttctagagctgcagaattcgtggctgctggtgtgcctttt-ggggagcagctgctgtgttcttttta |
6699184 |
T |
|
| Q |
315 |
actggtttttcggtttgtt |
333 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6699185 |
actggtttttcggtttgtt |
6699203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 16673169 - 16673227
Alignment:
| Q |
62 |
ttctgattttttgtagggtgttgtcatgttaccaaacatgtttgccaatgatttcagag |
120 |
Q |
| |
|
||||| ||| || ||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
16673169 |
ttctgttttattttagggtgttgtcaagttaccaaacatgtttgcagctgatttcagag |
16673227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 17647537 - 17647595
Alignment:
| Q |
62 |
ttctgattttttgtagggtgttgtcatgttaccaaacatgtttgccaatgatttcagag |
120 |
Q |
| |
|
||||| ||| || ||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
17647537 |
ttctgttttattttagggtgttgtcaagttaccaaacatgtttgcagctgatttcagag |
17647595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3905 times since January 2019
Visitors: 6176