View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_low_96 (Length: 349)
Name: NF0856_low_96
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_low_96 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 83 - 251
Target Start/End: Original strand, 3294071 - 3294239
Alignment:
| Q |
83 |
agcagagagaccaaaatcggagactttaagattctcgttttcatcgagtaataaattctccggttttaaatcacgatgagaaacacctctactatgacaa |
182 |
Q |
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| T |
3294071 |
agcagagagaccaaaatcggagactttaagattctcgttttcatcgagtaataaattctccggttttaaatcacgatgagaaacacctctactatggcaa |
3294170 |
T |
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| Q |
183 |
taatctacagcacttataagctgttggaagtactttcttgcaagttcttccttaaatttaccttttgct |
251 |
Q |
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| T |
3294171 |
taatctacagcacttataagctgttggaagtactttcttgcaagttcttccttaaatttaccttttgct |
3294239 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 9995094 - 9995146
Alignment:
| Q |
144 |
ggttttaaatcacgatgagaaacacctctactatgacaataatctacagcact |
196 |
Q |
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| T |
9995094 |
ggtttcaaatcacgatgacaaacacctctactatgacagtaatcaacagcact |
9995146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 251
Target Start/End: Original strand, 880912 - 881076
Alignment:
| Q |
87 |
gagagaccaaaatcggagactttaagattctcgttttcatcgagtaataaattctccggttttaaatcacgatgagaaacacctctactatgacaataat |
186 |
Q |
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| T |
880912 |
gagagtccaaaatcggagaccttgaggtcttcgttttcatccaagagtagattttctggtttcaaatcgcgatgtgtgacaccacgactatggcaaaaat |
881011 |
T |
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| Q |
187 |
ctacagcacttataagctgttggaagtactttcttgcaagttcttccttaaatttaccttttgct |
251 |
Q |
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| T |
881012 |
caacagcactaatgagttgttgaaagtactttctagcaacatcttcattcaattttccttttgct |
881076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 22370052 - 22370112
Alignment:
| Q |
163 |
aaacacctctactatgacaataatctacagcacttataagctgttggaagtactttcttgc |
223 |
Q |
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||||||||||||| ||||| ||||| ||||||| ||||||||| || || || |||||||| |
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| T |
22370052 |
aaacacctctactgtgacagtaatccacagcacatataagctgctgaaaatattttcttgc |
22370112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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