View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_high_11 (Length: 558)
Name: NF0857_high_11
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 33 - 529
Target Start/End: Original strand, 33617232 - 33617728
Alignment:
| Q |
33 |
tagtattatactattatggtacaatgtttttataatcatcggataaccattgcccaaataggatagactatgagaaagatgatgccaagtgtgttagata |
132 |
Q |
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| T |
33617232 |
tagtattatactattatggtacaacgtttttataatcatcggataaccattgcccaaataggatagactatgagaaagatgatgccaagtgtgttagata |
33617331 |
T |
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| Q |
133 |
ttccatgtctttgtgtgaaagaatttctgaatccaccagtagctctaatatgttcttgtagcaggtaacaaccaatgaaaagatcaattgctactccaat |
232 |
Q |
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| T |
33617332 |
ttccatgtctttgtgtgaaagaatttctgaatccaccagtagctctaatatgttcttgtagcaggtaacaaccaatgaaaagatcaattgctactccaat |
33617431 |
T |
|
| Q |
233 |
ccaattgttcctaaactttatagcaaacaagtcaggggttactgtcaaaagaaggaccattgatcctggcaactccaaccaatctgcatggattaatata |
332 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33617432 |
ccaattgttcctaaactttatagcaaacaaatcaggggttactgtcaaaagaaggactattgatcctggcaactccaaccaatctgcatggattaatata |
33617531 |
T |
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| Q |
333 |
tataattcaagttagttttgaaaaactaggcaccaatgctgttatacatatgtagctgattaaaattaattaaaacatataccgggaaaatgtttattga |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33617532 |
tataattcaagttagttttgaaaaactaggcaccaatgctgttatacatatgtagctgattaaaattaattaaaacatataccgggaaaatgtttattga |
33617631 |
T |
|
| Q |
433 |
agaaaagcctcaacacgactgcaacgaaagcaaaccattttccaactcctcctctgaaaataataaaaaatttcgacaaattttcagtgtagaactc |
529 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33617632 |
agaaaagcctcaacacgactgcaacgaaagcaaaccattttccaactcctcctctgaaaataataaaaaatttcgacaaattttcagtgtagaactc |
33617728 |
T |
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