View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_high_118 (Length: 204)
Name: NF0857_high_118
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_high_118 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 39890197 - 39890321
Alignment:
| Q |
56 |
caactcttttattacctttggtcaaaccaattgaatccaaccccttttctatgatagttcaatgttaatggcggtcacctatactctctattactttaag |
155 |
Q |
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| T |
39890197 |
caactcttttattacctttggtcaaaccaattgaatccaaccccttttctatgatagttcaatgttaatggcggtcacatatactctctattacttgaag |
39890296 |
T |
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| Q |
156 |
tttttcttttaaaaagacacatttt |
180 |
Q |
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|||| ||||||||| |||||||||| |
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| T |
39890297 |
ttttgcttttaaaacgacacatttt |
39890321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 39890128 - 39890197
Alignment:
| Q |
30 |
gatttgaatataaacatttaacttatcaactcttttattacctttggtcaaaccaattgaatccaacccc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39890128 |
gatttgaatataaacatttaacttatcaactcttttattacctttggtcaaaccaattgaatccaacccc |
39890197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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