View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_high_2 (Length: 686)
Name: NF0857_high_2
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 588; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 1 - 612
Target Start/End: Complemental strand, 21242767 - 21242156
Alignment:
| Q |
1 |
ccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcattacctattagatataaagtttgttatgtagagaatgatgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242767 |
ccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcattacctattagatataaagtttgttatgtagagaatgatgag |
21242668 |
T |
|
| Q |
101 |
aacagctaactagtcaaactataactaaccaatctaactaactttgtatataatattacccgaattgatgataattgctggaaagttgaaattgaaactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21242667 |
aacagctaactagtcaaactataactaaccaatctaactaactttgtatataatattacccgaattaatgataattgctggaaagttgaaattgaaactc |
21242568 |
T |
|
| Q |
201 |
ttcactttgctccataattcagggacagtgatgactagtttaggattggaatccttgatttgtttggagagttctgcaacggtgtaaagaggatttgcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21242567 |
ttcactttgctccataattcagggacagtgatgactagtttaggattggaatccttgatttgtttggagagttccgcaacggtgtaaagaggatttgcag |
21242468 |
T |
|
| Q |
301 |
tggtgactattgcgccgatggaggcagcagctaggaaacatacagggaattcgatgttattaggggagaggatgaggacgacgtcgtttttgtttatgcc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21242467 |
tggtgactattgcgccgatggaggcagcagctaggaaacatacagggaattcgatgttattgggggagaggatgaggacgacgtcgtttttgtttatgcc |
21242368 |
T |
|
| Q |
401 |
aaagtttagtaaactgtgtgcaagttttgcaacttgtgttttgagttgagagaaggagaatgttcgggaagagtctgcgtcgatgagggcggttttgtta |
500 |
Q |
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| T |
21242367 |
aaagtttagtaaactgtgtgcaagttttgcaacttgtgttttgagttgagagaaggagagtgtttgggaagagtctgcgtcgatgagggcggttttgtta |
21242268 |
T |
|
| Q |
501 |
ggggaagaggagacacttgtgaagaggaatgagactaaggaaaggtttggattgtttgggagggctagagaaggtcttagggacctgtatattccatctg |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21242267 |
ggggaagaggagacacttgtgaagaggaatgagactaaggaaaggtttggattgtttgggagggctagagaaggtcttagggacctgtaaattccatctg |
21242168 |
T |
|
| Q |
601 |
gaccataacctg |
612 |
Q |
| |
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|||||||||||| |
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| T |
21242167 |
gaccataacctg |
21242156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 21258539 - 21258411
Alignment:
| Q |
5 |
gctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgcattacctattagatataaagtttgttatgtagagaatgatgagaaca |
104 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| |||| | |||| |||||||||||||| |||||||||||||||||| ||| |||||||||| ||| |
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| T |
21258539 |
gctgattctatcaacgcctcaaaactcgtgaagttcgaatttcaacctgttgcattacctatcagatataaagtttgttatatagcgaatgatgagtaca |
21258440 |
T |
|
| Q |
105 |
gctaactagtcaaactataactaaccaat |
133 |
Q |
| |
|
|||||||||| |||||| |||| ||||| |
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|
| T |
21258439 |
gctaactagtgtaactatcactatccaat |
21258411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 21254024 - 21253893
Alignment:
| Q |
4 |
tgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgc----attacctattagatataaagtttgt--tatgtagagaatgat |
97 |
Q |
| |
|
||||| ||||||||||| ||||||||| |||||||||||| |||||||||| | |||||||||||||| |||||||||| ||| || || ||||| |
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| T |
21254024 |
tgctgtttcaatcaacgactcaaaactggtgaagtttgaatttgaacccgttacattaattacctattagatgtaaagtttgttatatataaagtatgat |
21253925 |
T |
|
| Q |
98 |
gagaacagctaactagtcaaactataactaac |
129 |
Q |
| |
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|||||||||||||||| || |||||||||| |
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|
| T |
21253924 |
aagaacagctaactagtttaattataactaac |
21253893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 612
Target Start/End: Original strand, 40810140 - 40810182
Alignment:
| Q |
570 |
gaaggtcttagggacctgtatattccatctggaccataacctg |
612 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||| ||||||| |
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| T |
40810140 |
gaaggtcttaaggacctgtatattccatctgaaccgtaacctg |
40810182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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