View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0857_high_22 (Length: 419)

Name: NF0857_high_22
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0857_high_22
NF0857_high_22
[»] chr4 (7 HSPs)
chr4 (139-409)||(10452182-10452451)
chr4 (1-140)||(10452474-10452614)
chr4 (148-275)||(31957529-31957656)
chr4 (181-275)||(29802603-29802697)
chr4 (152-215)||(34544139-34544202)
chr4 (150-253)||(41603213-41603316)
chr4 (208-275)||(31894671-31894739)
[»] chr2 (4 HSPs)
chr2 (152-255)||(2336657-2336760)
chr2 (155-244)||(2803199-2803288)
chr2 (152-250)||(2323649-2323746)
chr2 (152-214)||(33953834-33953896)
[»] chr8 (2 HSPs)
chr8 (152-255)||(40991786-40991889)
chr8 (181-256)||(11442915-11442991)
[»] chr3 (6 HSPs)
chr3 (187-253)||(41857492-41857558)
chr3 (148-231)||(47508138-47508221)
chr3 (148-214)||(25317187-25317253)
chr3 (182-214)||(3384329-3384361)
chr3 (200-256)||(45717830-45717886)
chr3 (180-256)||(50329353-50329429)
[»] chr1 (2 HSPs)
chr1 (181-255)||(2229282-2229356)
chr1 (205-286)||(11001774-11001856)
[»] chr7 (1 HSPs)
chr7 (148-231)||(45679479-45679562)
[»] chr6 (3 HSPs)
chr6 (202-259)||(405039-405096)
chr6 (223-264)||(5035334-5035375)
chr6 (218-251)||(34331348-34331381)
[»] chr5 (2 HSPs)
chr5 (217-253)||(2827788-2827824)
chr5 (152-196)||(36521977-36522021)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 139 - 409
Target Start/End: Complemental strand, 10452451 - 10452182
Alignment:
Q  139 ttcacgattgatggaaaagtggatgttgaacactctataaaagagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgttcaactc 238  Q
    ||||| || ||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10452451 ttcacaatagatggaaaaatggatgtttaacactatataaaagagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgttcaactc 10452352  T
Q  239 acttgtatggttgctcttgatctaatgcggatgatccttaagctccccatcgtgacaaaacatggtaccataaaaataagattaagcagaagaagaacga 338  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10452351 acttgtatggttgctcttgatctaatgtgaatgatccttaagctccccatcgtgacaaaacatggtaccataaaaataagattaaggagaagaagaacga 10452252  T
Q  339 acaccatataatannnnnnnngcttggttcaacccaaatttacttacgtctgcagtgggaatagctctctg 409  Q
    |||||||||||||        ||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  10452251 acaccatataata-tttttttgcttggttcgacctaaatttacttacatctgcagtgggaatagctctctg 10452182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 10452614 - 10452474
Alignment:
Q  1 taagtatcgaggtttaattcttctctcattaatatcactttaaacattaatacttttcttctttctcaattttttcaac-nnnnnnnngtgttgaaacta 99  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||         ||||||||||||    
T  10452614 taagtaacgaggtttaattcttctctcattaatatcacttcaaacaataatacttttcttctttctcaattttttcaacaaaaaaaaagtgttgaaacta 10452515  T
Q  100 agttttggttatcacttgctttcttgcatttaccgtgtgtt 140  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10452514 agttttggttatcacttgctttcttgcatttaccgtgtgtt 10452474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 275
Target Start/End: Original strand, 31957529 - 31957656
Alignment:
Q  148 gatggaaaagtggatgttgaacactctataaaagagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgttcaactcacttgtatg 247  Q
    ||||||||||||  ||||||||| | |||||  ||||| | ||||||||   ||||||||| |||||  ||||| ||||||||| |||||||||||  ||    
T  31957529 gatggaaaagtgagtgttgaacaatatataagtgagagaatccataaacaaaatgccttaaggttttgggttaagatgtggtgtccaactcacttgcgtg 31957628  T
Q  248 gttgctcttgatctaatgcggatgatcc 275  Q
    ||||||||||  || ||| |||||||||    
T  31957629 gttgctcttgccctgatgaggatgatcc 31957656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 29802603 - 29802697
Alignment:
Q  181 gagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgttcaactcacttgtatggttgctcttgatctaatgcggatgatcc 275  Q
    ||||||||||||||||   ||||||||| |||||  ||||| || |||||| |||||||||||| ||||||||||||  | |||| |||||||||    
T  29802603 gagaggacccataaacccaatgccttaaggttttgtgttaagatatggtgtccaactcacttgtgtggttgctcttggcccaatgtggatgatcc 29802697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 34544139 - 34544202
Alignment:
Q  152 gaaaagtggatgttgaacactctataaaagagaggacccataaacttcatgccttaaagttttt 215  Q
    |||||||||| ||||| |||| |||||| |||||||||||||||||   |||||||| ||||||    
T  34544139 gaaaagtggaggttgatcactttataaatgagaggacccataaactcattgccttaaggttttt 34544202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 253
Target Start/End: Complemental strand, 41603316 - 41603213
Alignment:
Q  150 tggaaaagtggatgttgaacactctataaaagagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgttcaactcacttgtatggt 249  Q
    |||||||||||| ||||| |||| |||||  |||| ||||||||||| |  || ||||| |||||  || || || |||||| ||| |||||||||||||    
T  41603316 tggaaaagtggaggttgagcactttataagtgagaagacccataaacatagtgtcttaaggttttgggtaaagatttggtgtacaattcacttgtatggt 41603217  T
Q  250 tgct 253  Q
    ||||    
T  41603216 tgct 41603213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 31894671 - 31894739
Alignment:
Q  208 aagtttttag-ttaaaatgtggtgttcaactcacttgtatggttgctcttgatctaatgcggatgatcc 275  Q
    |||||||||| |||| |||| |||| ||| |||||||| ||||||||||||  |||||| |||||||||    
T  31894671 aagtttttaggttaagatgttgtgtccaattcacttgtgtggttgctcttgtcctaatgaggatgatcc 31894739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 2336657 - 2336760
Alignment:
Q  152 gaaaagtggatgttgaacactctataaaagagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgttcaactcacttgtatggttg 251  Q
    |||||||||| |||||||||| |||||  ||||||||||||||| |  |||||||||  ||||  ||||| ||||||||| |||||||||||| ||||||    
T  2336657 gaaaagtggaggttgaacactttataagtgagaggacccataaattcaatgccttaagattttgggttaagatgtggtgtccaactcacttgtgtggttg 2336756  T
Q  252 ctct 255  Q
    ||||    
T  2336757 ctct 2336760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 244
Target Start/End: Complemental strand, 2803288 - 2803199
Alignment:
Q  155 aagtggatgttgaacactctataaaagagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgttcaactcacttgt 244  Q
    ||||||| |||||||| ||||||||||||| ||||||||||||| ||| ||||| |||||  || ||| |||| ||| ||||||||||||    
T  2803288 aagtggaggttgaacattctataaaagagatgacccataaacttaatgtcttaacgttttgggtaaaagtgtgatgtccaactcacttgt 2803199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 2323649 - 2323746
Alignment:
Q  152 gaaaagtggatgttgaacactctataaaagagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgttcaactcacttgtatggtt 250  Q
    ||||| |||| |||| ||||| |||||  ||||||| ||||||||   ||||||||| |||||  ||||| ||||||||| ||||||||||||||||||    
T  2323649 gaaaaatggaggttggacactttataagtgagaggatccataaacca-atgccttaaggttttaggttaagatgtggtgtccaactcacttgtatggtt 2323746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 33953896 - 33953834
Alignment:
Q  152 gaaaagtggatgttgaacactctataaaagagaggacccataaacttcatgccttaaagtttt 214  Q
    |||||||||| |||||||||| |||||  |||||||||||||||| |  ||||||||| ||||    
T  33953896 gaaaagtggaggttgaacactatataagtgagaggacccataaacctgttgccttaaaatttt 33953834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 40991786 - 40991889
Alignment:
Q  152 gaaaagtggatgttgaacactctataaaagagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgttcaactcacttgtatggttg 251  Q
    |||||||||| ||||||||||  ||||  ||||||||||||||||   |||||| || |||||  ||||| ||||||||| |||||||| ||| ||||||    
T  40991786 gaaaagtggaggttgaacacttcataagtgagaggacccataaacccaatgcctcaaggttttgggttaagatgtggtgtccaactcacctgtgtggttg 40991885  T
Q  252 ctct 255  Q
    ||||    
T  40991886 ctct 40991889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 11442915 - 11442991
Alignment:
Q  181 gagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgttcaa-ctcacttgtatggttgctctt 256  Q
    |||||||||||||||||  ||||||||| |||||  || || ||||||||| ||| ||||||||| |||||||||||    
T  11442915 gagaggacccataaactcaatgccttaaggttttgggtgaatatgtggtgtccaatctcacttgtgtggttgctctt 11442991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 41857492 - 41857558
Alignment:
Q  187 acccataaacttcatgccttaaagtttttagttaaaatgtggtgttcaactcacttgtatggttgct 253  Q
    |||||||||||  ||| |||||||||||  ||||| ||||| |||||||||||||||| ||||||||    
T  41857492 acccataaactcaatgacttaaagttttgggttaagatgtgatgttcaactcacttgtgtggttgct 41857558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 47508221 - 47508138
Alignment:
Q  148 gatggaaaagtggatgttgaacactctataaaagagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgt 231  Q
    |||||||||||  ||||| |||||| |||||  |||| ||| ||||||| | |||||||| |||||| |||||||| |||||||    
T  47508221 gatggaaaagtaaatgttcaacactttataagtgagatgactcataaacctaatgccttatagttttgagttaaaaagtggtgt 47508138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 25317187 - 25317253
Alignment:
Q  148 gatggaaaagtggatgttgaacactctataaaagagaggacccataaacttcatgccttaaagtttt 214  Q
    |||||||||||||| ||||| |||| | |||  ||||||||||||||||||  |||||||| |||||    
T  25317187 gatggaaaagtggaggttgagcactttgtaactgagaggacccataaacttgttgccttaaggtttt 25317253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 3384361 - 3384329
Alignment:
Q  182 agaggacccataaacttcatgccttaaagtttt 214  Q
    ||||||||||||||||| |||||||||||||||    
T  3384361 agaggacccataaacttaatgccttaaagtttt 3384329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 45717886 - 45717830
Alignment:
Q  200 atgccttaaagtttttagttaaaatgtggtgttcaactcacttgtatggttgctctt 256  Q
    ||||||||  ||||| ||| || ||||||||| ||||| ||||||||||||||||||    
T  45717886 atgccttagggttttgagtgaagatgtggtgtccaacttacttgtatggttgctctt 45717830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 50329429 - 50329353
Alignment:
Q  180 agagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgttcaactcacttgtatggttgctctt 256  Q
    ||||||||||||||||    ||||||||| |||||  ||||| | |||||||  ||||||||||| |||||||||||    
T  50329429 agagaggacccataaatccaatgccttaaggttttgggttaagacgtggtgtcaaactcacttgtttggttgctctt 50329353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 2229356 - 2229282
Alignment:
Q  181 gagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgttcaactcacttgtatggttgctct 255  Q
    |||||||| |||||||   ||||||||||||||| |||||| ||||||||||| ||| | |||| ||||||||||    
T  2229356 gagaggactcataaaccaaatgccttaaagttttgagttaagatgtggtgttcgactgagttgtgtggttgctct 2229282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 11001856 - 11001774
Alignment:
Q  205 ttaaagtttttagttaaaatgtggtgttcaactcacttgtatggttgctcttgatctaatgcggatgatc-cttaagctcccc 286  Q
    |||| ||||||||| |||||||||||| |||||| ||||| || |||||||||||| |||| |||| ||| ||||| ||||||    
T  11001856 ttaaggtttttagtcaaaatgtggtgtgcaactctcttgtgtgattgctcttgatccaatgtggatcatctcttaaactcccc 11001774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 45679562 - 45679479
Alignment:
Q  148 gatggaaaagtggatgttgaacactctataaaagagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgt 231  Q
    |||| |||| ||||||||| | ||| |||||  ||||||||| |||||||| || ||||||||||||  |||| ||||||||||    
T  45679562 gatgaaaaaatggatgttggatactttataagtgagaggacctataaacttaataccttaaagttttgggttataatgtggtgt 45679479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 405096 - 405039
Alignment:
Q  202 gccttaaagtttttagttaaaatgtggtgttcaactcacttgtatggttgctcttgat 259  Q
    |||||||||||||  |||||  |||||||||||||||||||   ||||||||||||||    
T  405096 gccttaaagttttaggttaaggtgtggtgttcaactcactttagtggttgctcttgat 405039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 5035375 - 5035334
Alignment:
Q  223 atgtggtgttcaactcacttgtatggttgctcttgatctaat 264  Q
    |||||||||||||||||||||| | |||||||||| ||||||    
T  5035375 atgtggtgttcaactcacttgtgttgttgctcttggtctaat 5035334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 34331348 - 34331381
Alignment:
Q  218 ttaaaatgtggtgttcaactcacttgtatggttg 251  Q
    |||||||||||||||||||| |||||||||||||    
T  34331348 ttaaaatgtggtgttcaactgacttgtatggttg 34331381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 2827788 - 2827824
Alignment:
Q  217 gttaaaatgtggtgttcaactcacttgtatggttgct 253  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  2827788 gttaaagtgtagtgttcaactcacttgtatggttgct 2827824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 36522021 - 36521977
Alignment:
Q  152 gaaaagtggatgttgaacactctataaaagagaggacccataaac 196  Q
    ||||||| || |||||||||||| |||| ||||||||||||||||    
T  36522021 gaaaagttgaggttgaacactctttaaatgagaggacccataaac 36521977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3409 times since January 2019
Visitors: 6174