View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0857_high_25 (Length: 384)
Name: NF0857_high_25
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 362
Target Start/End: Original strand, 18541293 - 18541625
Alignment:
| Q |
30 |
cagtggaatacatttgcagcatggtagcaatcatcaaaatgatgaaggtattgaagaccaagttatagaagttaagacattagagatagatgtagatggt |
129 |
Q |
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| T |
18541293 |
cagtggaatacatttgcagcatggtagcaatcatcaaaatgatgaaggtattggagagcaggttatagaagttaagacattagagatagatgtagatggt |
18541392 |
T |
|
| Q |
130 |
tccaaagagttatttgagaccaagttgaatgaagaaagaggagaagctgaggcaaggttttttcagaagcttgatgaagagcttaacaaggttaatgcct |
229 |
Q |
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| T |
18541393 |
tccaaagagttatttgagaccaagttgaatgaagaaagaggagaagctgaggcaaggttccttcagaagcttgatgaagagcttaacaaggttaatgcct |
18541492 |
T |
|
| Q |
230 |
tttataaggaacaggtggaggcagttaagcatgaagcaacacttttgagtaaacaagttgagactctagttgcattgagggtaaaggttaaaaaccttga |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18541493 |
tttataaggaacaggtggaggcagttaagcatgaagcaacacttttgagtaaacaagttgagactctagttgcattaagggtaaaggttaaaaaccttga |
18541592 |
T |
|
| Q |
330 |
tccaggtaaatgcaaaatatgtttttacacgta |
362 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
18541593 |
tccaggtaaatgcaaaatatgtttttacacgta |
18541625 |
T |
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