View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0857_high_27 (Length: 365)
Name: NF0857_high_27
Description: NF0857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0857_high_27 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 29 - 352
Target Start/End: Original strand, 322245 - 322568
Alignment:
| Q |
29 |
actcagtaccagtcattgaggcgtaagcggagaaatgtcaggcaatattatagttcacagcatgagtgatgtctgtatattgttttgaattttatgtttt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
322245 |
actcagtaccagtcattgaggcgtaagcggagaaatgtcaggcaatattatagttcacagcatgagtgatgtctgtatattgttttgaattttatgtttt |
322344 |
T |
|
| Q |
129 |
aagatgttgaatataaacctatgtagttggtccttatgaacctatgtacttggtcgttatgacatttgaatggatttatgaaagctttcatacttttatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
322345 |
aagatgttgaatataaacctatgtagttggtccttatgaacctatgtacttggtcgttatgacatttgaatggatttatgaaagctttcatacttttatt |
322444 |
T |
|
| Q |
229 |
gctgatttcaatcaatattactactactactccatataaatcccctaagtactgctattctcctatttactgccattccattaattcnnnnnnnnnngaa |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
322445 |
gctgatttcaatcaatattactactactattccatataaatcccctaagtactgctattctcctatttactgccattccattaattcaaaaaaaaaagaa |
322544 |
T |
|
| Q |
329 |
ctcaattcattactttgttgctct |
352 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
322545 |
ctcaattcattactttgttgctct |
322568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 29 - 315
Target Start/End: Complemental strand, 18295544 - 18295240
Alignment:
| Q |
29 |
actcagtaccagtcattgaggcgtaagcggagaaatgtcaggcaatattatagttcacagcatgagtgatgtctgtatattgttttgaattttatgtttt |
128 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
18295544 |
actcagtacaagtcattgaggcgtaagcggagaaaggtcaggcaatat---agttcacagcctgagtgatgtctgtatattgttttgagttttatgtttg |
18295448 |
T |
|
| Q |
129 |
aagatgttgaatataaacctatgtagttggtccttatgaacctatgtacttggtcgttatgacatttgaatggatttatgaa------------------ |
210 |
Q |
| |
|
|||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18295447 |
aagaagttggatatgaacctatgtagttggtccttatgaacctatgtacttggtcgttatgacatttgaatggatttatgaaattttgtaatttcaattc |
18295348 |
T |
|
| Q |
211 |
--agctttcatacttttattgctgatttcaatcaatattactactactac---tccatataaatcccctaagtactgctattctcctatttactgccatt |
305 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| || ||| |||||||||||||||||||||||||| |
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|
| T |
18295347 |
tcagctttcatacttttgttgctgatttaaatcaatattactactactactattccatataaattcc--gagtgctgctattctcctatttactgccatt |
18295250 |
T |
|
| Q |
306 |
ccattaattc |
315 |
Q |
| |
|
| |||||||| |
|
|
| T |
18295249 |
caattaattc |
18295240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 91 - 314
Target Start/End: Complemental strand, 47851239 - 47851002
Alignment:
| Q |
91 |
tgagtgatgtctgtatattgttttgaattttatgttttaagatgttgaatataaacctatgtagttggtccttatgaacctatgtacttggtcgttatga |
190 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
47851239 |
tgagtgatgtctgtatattgtt--gagttttatgttttaagaatttggatatgaacctatgtggttggtccttatgaacctatgtacttgg----tatga |
47851146 |
T |
|
| Q |
191 |
catttgaatggatttatgaa--------------------agctttcatacttttattgctgatttcaatcaatattactactactactccatataaatc |
270 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||||| |||||| |||||||| || |
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|
| T |
47851145 |
catttgaatggatttatgaaattttgtaatttcaattctcagctttcatacttttgttccagatttcaatcaatattactgctactattccatatatatt |
47851046 |
T |
|
| Q |
271 |
ccctaagtactgctattctcctatttactgccattccattaatt |
314 |
Q |
| |
|
|| | |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47851045 |
ccttgggtactgctattctcctatttgctgccattccattaatt |
47851002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 19811030 - 19810982
Alignment:
| Q |
28 |
cactcagtaccagtcattgaggcgtaagcggagaaatgtcaggcaatat |
76 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19811030 |
cactcagtaccagtcgttgaggcgtaagcggagaaatgtcaggcaatat |
19810982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 32687317 - 32687273
Alignment:
| Q |
28 |
cactcagtaccagtcattgaggcgtaagcggagaaatgtcaggca |
72 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32687317 |
cactcagtaccagtcgttgaggcgtaagcggagaaatgtcaggca |
32687273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 1199505 - 1199457
Alignment:
| Q |
28 |
cactcagtaccagtcattgaggcgtaagcggagaaatgtcaggcaatat |
76 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1199505 |
cactcagtaccagtcgttgaggcgtaagcggagaaatgtcaggcaatat |
1199457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 25207811 - 25207859
Alignment:
| Q |
28 |
cactcagtaccagtcattgaggcgtaagcggagaaatgtcaggcaatat |
76 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
25207811 |
cactcagtatcagtcgttgaagcgtaagcggagaaatgtcaggcaatat |
25207859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 26941971 - 26942015
Alignment:
| Q |
28 |
cactcagtaccagtcattgaggcgtaagcggagaaatgtcaggca |
72 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
26941971 |
cactcagtaccagtcgttgatgcgtaagcggagaaatgtcaggca |
26942015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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